Interaction between obesity and the gut microbiota: relevance in nutrition

NM Delzenne, PD Cani - Annual review of nutrition, 2011 - annualreviews.org
This review examines mechanisms by which the bacteria present in the gut interact with
nutrients and host biology to affect the risk of obesity and associated disorders, including …

Saliva microbiomes distinguish caries-active from healthy human populations

F Yang, X Zeng, K Ning, KL Liu, CC Lo… - The ISME …, 2012 - academic.oup.com
The etiology of dental caries remains elusive because of our limited understanding of the
complex oral microbiomes. The current methodologies have been limited by insufficient …

High-resolution phylogenetic microbial community profiling

E Singer, B Bushnell, D Coleman-Derr… - The ISME …, 2016 - academic.oup.com
Over the past decade, high-throughput short-read 16S rRNA gene amplicon sequencing has
eclipsed clone-dependent long-read Sanger sequencing for microbial community profiling …

Biodiversity and functional genomics in the human microbiome

XC Morgan, N Segata, C Huttenhower - Trends in genetics, 2013 - cell.com
Over the course of our lives, humans are colonized by a tremendous diversity of commensal
microbes, which comprise the human microbiome. The collective genetic potential …

Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age

JC Stearns, CJ Davidson, S McKeon… - The ISME …, 2015 - academic.oup.com
The upper respiratory tract (URT) is a crucial site for host defense, as it is home to bacterial
communities that both modulate host immune defense and serve as a reservoir of potential …

[HTML][HTML] Defining the normal core microbiome of conjunctival microbial communities

Y Huang, B Yang, W Li - Clinical Microbiology and Infection, 2016 - Elsevier
Bacterial ocular infections are common. Traditional culture and molecular biological
methods have obvious limitations to identify the conjunctival microbiota, while metagenomic …

[HTML][HTML] Metagenomic and metatranscriptomic analysis of microbial community structure and gene expression of activated sludge

K Yu, T Zhang - PloS one, 2012 - journals.plos.org
The present study applied both metagenomic and metatranscriptomic approaches to
characterize microbial structure and gene expression of an activated sludge community from …

[HTML][HTML] EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

CS Miller, BJ Baker, BC Thomas, SW Singer… - Genome biology, 2011 - Springer
Recovery of ribosomal small subunit genes by assembly of short read community DNA
sequence data generally fails, making taxonomic characterization difficult. Here, we solve …

Oral microbiota and Alzheimer's disease: Do all roads lead to Rome?

A Sureda, M Daglia, SA Castilla, N Sanadgol… - Pharmacological …, 2020 - Elsevier
Alzheimer's disease (AD) is a progressive neurodegenerative pathology affecting milions of
people worldwide associated with deposition of senile plaques. While the genetic and …

[HTML][HTML] Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities

A Checinska, AJ Probst, P Vaishampayan, JR White… - Microbiome, 2015 - Springer
Abstract Background The International Space Station (ISS) is a unique built environment
due to the effects of microgravity, space radiation, elevated carbon dioxide levels, and …