Single‐cell RNA sequencing technologies and applications: A brief overview

D Jovic, X Liang, H Zeng, L Lin, F Xu… - Clinical and …, 2022 - Wiley Online Library
Single‐cell RNA sequencing (scRNA‐seq) technology has become the state‐of‐the‐art
approach for unravelling the heterogeneity and complexity of RNA transcripts within …

Machine learning bridges omics sciences and plant breeding

J Yan, X Wang - Trends in Plant Science, 2023 - cell.com
Some of the biological knowledge obtained from fundamental research will be implemented
in applied plant breeding. To bridge basic research and breeding practice, machine learning …

[HTML][HTML] SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks

C Bravo González-Blas, S De Winter, G Hulselmans… - Nature …, 2023 - nature.com
Joint profiling of chromatin accessibility and gene expression in individual cells provides an
opportunity to decipher enhancer-driven gene regulatory networks (GRNs). Here we present …

[HTML][HTML] Glioblastoma hijacks neuronal mechanisms for brain invasion

V Venkataramani, Y Yang, MC Schubert, E Reyhan… - Cell, 2022 - cell.com
Glioblastomas are incurable tumors infiltrating the brain. A subpopulation of glioblastoma
cells forms a functional and therapy-resistant tumor cell network interconnected by tumor …

A cellular hierarchy framework for understanding heterogeneity and predicting drug response in acute myeloid leukemia

AGX Zeng, S Bansal, L Jin, A Mitchell, WC Chen… - Nature medicine, 2022 - nature.com
The treatment landscape of acute myeloid leukemia (AML) is evolving, with promising
therapies entering clinical translation, yet patient responses remain heterogeneous, and …

[HTML][HTML] Cross-tissue single-cell landscape of human monocytes and macrophages in health and disease

K Mulder, AA Patel, WT Kong, C Piot, E Halitzki… - Immunity, 2021 - cell.com
Mononuclear phagocytes (MNPs) encompass dendritic cells, monocytes, and macrophages
(MoMac), which exhibit antimicrobial, homeostatic, and immunoregulatory functions. We …

[HTML][HTML] Safety, efficacy and determinants of response of allogeneic CD19-specific CAR-NK cells in CD19+ B cell tumors: a phase 1/2 trial

D Marin, Y Li, R Basar, H Rafei, M Daher, J Dou… - Nature medicine, 2024 - nature.com
There is a pressing need for allogeneic chimeric antigen receptor (CAR)-immune cell
therapies that are safe, effective and affordable. We conducted a phase 1/2 trial of cord …

[HTML][HTML] Multi-omics resolves a sharp disease-state shift between mild and moderate COVID-19

Y Su, D Chen, D Yuan, C Lausted, J Choi, CL Dai… - Cell, 2020 - cell.com
We present an integrated analysis of the clinical measurements, immune cells, and plasma
multi-omics of 139 COVID-19 patients representing all levels of disease severity, from serial …

[HTML][HTML] Mapping the single-cell transcriptomic response of murine diabetic kidney disease to therapies

H Wu, RG Villalobos, X Yao, D Reilly, T Chen… - Cell metabolism, 2022 - cell.com
Diabetic kidney disease (DKD) occurs in∼ 40% of patients with diabetes and causes kidney
failure, cardiovascular disease, and premature death. We analyzed the response of a …

[HTML][HTML] Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps

B Chen, S Cherie'R, ET McKinley, AJ Simmons… - Cell, 2021 - cell.com
Colorectal cancers (CRCs) arise from precursor polyps whose cellular origins, molecular
heterogeneity, and immunogenic potential may reveal diagnostic and therapeutic insights …