The phylogenomics of evolving virus virulence

JL Geoghegan, EC Holmes - Nature Reviews Genetics, 2018 - nature.com
How virulence evolves after a virus jumps to a new host species is central to disease
emergence. Our current understanding of virulence evolution is based on insights drawn …

Why do RNA viruses recombine?

E Simon-Loriere, EC Holmes - Nature Reviews Microbiology, 2011 - nature.com
Recombination occurs in many RNA viruses and can be of major evolutionary significance.
However, rates of recombination vary dramatically among RNA viruses, which can range …

Rates of evolutionary change in viruses: patterns and determinants

S Duffy, LA Shackelton, EC Holmes - Nature Reviews Genetics, 2008 - nature.com
Understanding the factors that determine the rate at which genomes generate and fix
mutations provides important insights into key evolutionary mechanisms. We review our …

Fluctuating asymmetry: methods, theory, and applications

JH Graham, S Raz, H Hel-Or, E Nevo - Symmetry, 2010 - mdpi.com
Fluctuating asymmetry consists of random deviations from perfect symmetry in populations
of organisms. It is a measure of developmental noise, which reflects a population's average …

How viruses hijack cell regulation

NE Davey, G Travé, TJ Gibson - Trends in biochemical sciences, 2011 - cell.com
Viruses, as obligate intracellular parasites, are the pathogens that have the most intimate
relationship with their host, and as such, their genomes have been shaped directly by …

[图书][B] The evolution and emergence of RNA viruses

EC Holmes - 2009 - books.google.com
RNA viruses provide unique insights into the patterns and processes of evolutionary change
in real time. The study of viral evolution is especially topical given the growing awareness …

Evolution and emergence of plant viruses

SF Elena, A Fraile, F García-Arenal - Advances in virus research, 2014 - Elsevier
Viruses are common agents of plant infectious diseases. During last decades, worldwide
agriculture production has been compromised by a series of epidemics caused by new …

Robustness–epistasis link shapes the fitness landscape of a randomly drifting protein

S Bershtein, M Segal, R Bekerman, N Tokuriki… - Nature, 2006 - nature.com
The distribution of fitness effects of protein mutations is still unknown,. Of particular interest is
whether accumulating deleterious mutations interact, and how the resulting epistatic effects …

Mechanisms and concepts in RNA virus population dynamics and evolution

PT Dolan, ZJ Whitfield, R Andino - Annual Review of Virology, 2018 - annualreviews.org
RNA viruses are unique in their evolutionary capacity, exhibiting high mutation rates and
frequent recombination. They rapidly adapt to environmental changes, such as shifts in …

Evolutionary constraints on chaperone-mediated folding provide an antiviral approach refractory to development of drug resistance

R Geller, M Vignuzzi, R Andino… - Genes & …, 2007 - genesdev.cshlp.org
The genome diversity of RNA viruses allows for rapid adaptation to a wide variety of adverse
conditions. Accordingly, viruses can escape inhibition by most antiviral compounds targeting …