Spatial omics and multiplexed imaging to explore cancer biology

SM Lewis, ML Asselin-Labat, Q Nguyen, J Berthelet… - Nature …, 2021 - nature.com
Understanding intratumoral heterogeneity—the molecular variation among cells within a
tumor—promises to address outstanding questions in cancer biology and improve the …

Eleven grand challenges in single-cell data science

D Lähnemann, J Köster, E Szczurek, DJ McCarthy… - Genome biology, 2020 - Springer
The recent boom in microfluidics and combinatorial indexing strategies, combined with low
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …

Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue

D Gyllborg, CM Langseth, X Qian, E Choi… - Nucleic acids …, 2020 - academic.oup.com
Visualization of the transcriptome in situ has proven to be a valuable tool in exploring single-
cell RNA-sequencing data, providing an additional spatial dimension to investigate …

[HTML][HTML] A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung

A Sountoulidis, S Marco Salas, E Braun, C Avenel… - Nature Cell …, 2023 - nature.com
The lung contains numerous specialized cell types with distinct roles in tissue function and
integrity. To clarify the origins and mechanisms generating cell heterogeneity, we created a …

[HTML][HTML] Computational solutions for spatial transcriptomics

I Kleino, P Frolovaitė, T Suomi, LL Elo - Computational and structural …, 2022 - Elsevier
Transcriptome level expression data connected to the spatial organization of the cells and
molecules would allow a comprehensive understanding of how gene expression is …

Smartphone‐based clinical diagnostics: towards democratization of evidence‐based health care

I Hernández‐Neuta, F Neumann… - Journal of internal …, 2019 - Wiley Online Library
Recent advancements in bioanalytical techniques have led to the development of novel and
robust diagnostic approaches that hold promise for providing optimal patient treatment …

The human islet: mini-organ with mega-impact

JT Walker, DC Saunders, M Brissova… - Endocrine …, 2021 - academic.oup.com
This review focuses on the human pancreatic islet—including its structure, cell composition,
development, function, and dysfunction. After providing a historical timeline of key …

Direct RNA targeted in situ sequencing for transcriptomic profiling in tissue

H Lee, S Marco Salas, D Gyllborg, M Nilsson - Scientific reports, 2022 - nature.com
Highly multiplexed spatial mapping of transcripts within tissues allows for investigation of the
transcriptomic and cellular diversity of mammalian organs previously unseen. Here we …

[HTML][HTML] Modeling cell-cell interactions from spatial molecular data with spatial variance component analysis

D Arnol, D Schapiro, B Bodenmiller, J Saez-Rodriguez… - Cell reports, 2019 - cell.com
Technological advances enable assaying multiplexed spatially resolved RNA and protein
expression profiling of individual cells, thereby capturing molecular variations in …

SCRINSHOT enables spatial mapping of cell states in tissue sections with single-cell resolution

A Sountoulidis, A Liontos, HP Nguyen, AB Firsova… - PLoS …, 2020 - journals.plos.org
Changes in cell identities and positions underlie tissue development and disease
progression. Although single-cell mRNA sequencing (scRNA-Seq) methods rapidly …