A survey of methods for 3D histology reconstruction

J Pichat, JE Iglesias, T Yousry, S Ourselin… - Medical image analysis, 2018 - Elsevier
Histology permits the observation of otherwise invisible structures of the internal topography
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …

ISLES 2015-A public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI

O Maier, BH Menze, J Von der Gablentz, L Häni… - Medical image …, 2017 - Elsevier
Ischemic stroke is the most common cerebrovascular disease, and its diagnosis, treatment,
and study relies on non-invasive imaging. Algorithms for stroke lesion segmentation from …

ANHIR: automatic non-rigid histological image registration challenge

J Borovec, J Kybic, I Arganda-Carreras… - IEEE transactions on …, 2020 - ieeexplore.ieee.org
Automatic Non-rigid Histological Image Registration (ANHIR) challenge was organized to
compare the performance of image registration algorithms on several kinds of microscopy …

Label-free automated three-dimensional imaging of whole organs by microtomy-assisted photoacoustic microscopy

TTW Wong, R Zhang, C Zhang, HC Hsu… - Nature …, 2017 - nature.com
Abstract Three-dimensional (3D) optical imaging of whole biological organs with
microscopic resolution has remained a challenge. Most versions of such imaging techniques …

Space in cancer biology: its role and implications

A Fomitcheva-Khartchenko, A Kashyap, T Geiger… - Trends in Cancer, 2022 - cell.com
Tumor cells present complex behaviors in their interactions with other cells. This intricate
behavior is driving the need to develop new tools to understand these ecosystems. The …

Phosphotungstic acid‐enhanced microCT: Optimized protocols for embryonic and early postnatal mice

KM Lesciotto, SM Motch Perrine… - Developmental …, 2020 - Wiley Online Library
Background Given the need for descriptive and increasingly mechanistic morphological
analyses, contrast‐enhanced microcomputed tomography (microCT) represents perhaps the …

Unsupervised histological image registration using structural feature guided convolutional neural network

L Ge, X Wei, Y Hao, J Luo, Y Xu - IEEE Transactions on …, 2022 - ieeexplore.ieee.org
Registration of multiple stained images is a fundamental task in histological image analysis.
In supervised methods, obtaining ground-truth data with known correspondences is …

An exhaustive analytical study of U-Net architecture on two diverse biomedical imaging datasets of electron microscopy drosophila ssTEM and brain MRI BraTS-2021 …

B Jena, GK Nayak, S Paul, S Saxena - SN Computer Science, 2022 - Springer
Biomedical image segmentation is a mechanism that distinguishes the boundaries of
various lesion regions within the image, be it 2D or 3D. In the current scenario, various soft …

[HTML][HTML] Three-dimensional analysis reveals two major architectural subgroups of prostate cancer growth patterns

EI Verhoef, WA van Cappellen, JA Slotman… - Modern Pathology, 2019 - Elsevier
The Gleason score is one of the most important parameters for therapeutic decision-making
in prostate cancer patients. Gleason growth patterns are defined by their histological …

Multiplex three-dimensional mapping of macromolecular drug distribution in the tumor microenvironment

SSY Lee, VP Bindokas, SJ Kron - Molecular cancer therapeutics, 2019 - AACR
Macromolecular cancer drugs such as therapeutic antibodies and nanoparticles are well
known to display slow extravasation and incomplete penetration into tumors, potentially …