[HTML][HTML] The human transcription factors

SA Lambert, A Jolma, LF Campitelli, PK Das, Y Yin… - Cell, 2018 - cell.com
Transcription factors (TFs) recognize specific DNA sequences to control chromatin and
transcription, forming a complex system that guides expression of the genome. Despite keen …

[HTML][HTML] The extracellular matrix: Tools and insights for the “omics” era

A Naba, KR Clauser, H Ding, CA Whittaker, SA Carr… - Matrix Biology, 2016 - Elsevier
The extracellular matrix (ECM) is a fundamental component of multicellular organisms that
provides mechanical and chemical cues that orchestrate cellular and tissue organization …

20 years of the SMART protein domain annotation resource

I Letunic, P Bork - Nucleic acids research, 2018 - academic.oup.com
Abstract SMART (Simple Modular Architecture Research Tool) is a web resource
(http://smart. embl. de) for the identification and annotation of protein domains and the …

YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs

IA Roundtree, GZ Luo, Z Zhang, X Wang, T Zhou, Y Cui… - elife, 2017 - elifesciences.org
N 6-methyladenosine (m6A) is the most abundant internal modification of eukaryotic
messenger RNA (mRNA) and plays critical roles in RNA biology. The function of this …

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

A Marchler-Bauer, Y Bo, L Han, J He… - Nucleic acids …, 2017 - academic.oup.com
Abstract NCBI's Conserved Domain Database (CDD) aims at annotating biomolecular
sequences with the location of evolutionarily conserved protein domain footprints, and …

InterPro in 2017—beyond protein family and domain annotations

RD Finn, TK Attwood, PC Babbitt… - Nucleic acids …, 2017 - academic.oup.com
Abstract InterPro (http://www. ebi. ac. uk/interpro/) is a freely available database used to
classify protein sequences into families and to predict the presence of important domains …

Asgard archaea illuminate the origin of eukaryotic cellular complexity

K Zaremba-Niedzwiedzka, EF Caceres, JH Saw… - Nature, 2017 - nature.com
The origin and cellular complexity of eukaryotes represent a major enigma in biology.
Current data support scenarios in which an archaeal host cell and an alphaproteobacterial …

Stress-triggered phase separation is an adaptive, evolutionarily tuned response

JA Riback, CD Katanski, JL Kear-Scott, EV Pilipenko… - Cell, 2017 - cell.com
In eukaryotic cells, diverse stresses trigger coalescence of RNA-binding proteins into stress
granules. In vitro, stress-granule-associated proteins can demix to form liquids, hydrogels …

Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp …

M Borowiak, J Fischer, JA Hammerl… - Journal of …, 2017 - academic.oup.com
Objectives Plasmid-mediated mobilized colistin resistance is currently known to be caused
by phosphoethanolamine transferases termed MCR-1, MCR-2, MCR-3 and MCR-4 …

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

J Huerta-Cepas, D Szklarczyk, K Forslund… - Nucleic acids …, 2016 - academic.oup.com
Abstract eggNOG is a public resource that provides Orthologous Groups (OGs) of proteins at
different taxonomic levels, each with integrated and summarized functional annotations …