Understanding tissue-specific gene regulation

AR Sonawane, J Platig, M Fagny, CY Chen… - Cell reports, 2017 - cell.com
Although all human tissues carry out common processes, tissues are distinguished by gene
expression patterns, implying that distinct regulatory programs control tissue specificity. In …

Hipposeq: a comprehensive RNA-seq database of gene expression in hippocampal principal neurons

MS Cembrowski, L Wang, K Sugino, BC Shields… - elife, 2016 - elifesciences.org
Clarifying gene expression in narrowly defined neuronal populations can provide insight
into cellular identity, computation, and functionality. Here, we used next-generation RNA …

Broad transcriptomic dysregulation occurs across the cerebral cortex in ASD

MJ Gandal, JR Haney, B Wamsley, CX Yap, S Parhami… - Nature, 2022 - nature.com
Neuropsychiatric disorders classically lack defining brain pathologies, but recent work has
demonstrated dysregulation at the molecular level, characterized by transcriptomic and …

Long-term neural and physiological phenotyping of a single human

RA Poldrack, TO Laumann, O Koyejo, B Gregory… - Nature …, 2015 - nature.com
Psychiatric disorders are characterized by major fluctuations in psychological function over
the course of weeks and months, but the dynamic characteristics of brain function over this …

Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

Z Xue, K Huang, C Cai, L Cai, C Jiang, Y Feng, Z Liu… - Nature, 2013 - nature.com
Mammalian pre-implantation development is a complex process involving dramatic changes
in the transcriptional architecture,,,. We report here a comprehensive analysis of …

Sulforaphane reduces hepatic glucose production and improves glucose control in patients with type 2 diabetes

AS Axelsson, E Tubbs, B Mecham, S Chacko… - Science translational …, 2017 - science.org
A potentially useful approach for drug discovery is to connect gene expression profiles of
disease-affected tissues (“disease signatures”) to drug signatures, but it remains to be …

Reconstitution of the oocyte transcriptional network with transcription factors

N Hamazaki, H Kyogoku, H Araki, F Miura, C Horikawa… - Nature, 2021 - nature.com
During female germline development, oocytes become a highly specialized cell type and
form a maternal cytoplasmic store of crucial factors. Oocyte growth is triggered at the …

Dissecting cell identity via network inference and in silico gene perturbation

K Kamimoto, B Stringa, CM Hoffmann, K Jindal… - Nature, 2023 - nature.com
Cell identity is governed by the complex regulation of gene expression, represented as gene-
regulatory networks. Here we use gene-regulatory networks inferred from single-cell multi …

Omics sciences for systems biology in Alzheimer's disease: State-of-the-art of the evidence

H Hampel, R Nisticò, NT Seyfried, AI Levey… - Ageing Research …, 2021 - Elsevier
Alzheimer's disease (AD) is characterized by non-linear, genetic-driven pathophysiological
dynamics with high heterogeneity in biological alterations and disease spatial-temporal …

[HTML][HTML] Alzheimer's risk factors age, APOE genotype, and sex drive distinct molecular pathways

N Zhao, Y Ren, Y Yamazaki, W Qiao, F Li, LM Felton… - Neuron, 2020 - cell.com
Evidence suggests interplay among the three major risk factors for Alzheimer's disease (AD):
age, APOE genotype, and sex. Here, we present comprehensive datasets and analyses of …