Genomic variant benchmark: if you cannot measure it, you cannot improve it

S Majidian, DP Agustinho, CS Chin, FJ Sedlazeck… - Genome Biology, 2023 - Springer
Genomic benchmark datasets are essential to driving the field of genomics and
bioinformatics. They provide a snapshot of the performances of sequencing technologies …

[图书][B] Genomes 5

TA Brown - 2023 - taylorfrancis.com
Genomes 5 has been completely revised and updated. It is a thoroughly modern textbook
about genomes and how they are investigated. As with previous Genomes editions …

Benchmarking multi-platform sequencing technologies for human genome assembly

J Wang, WP Veldsman, X Fang, Y Huang… - Briefings in …, 2023 - academic.oup.com
Genome assembly is a computational technique that involves piecing together
deoxyribonucleic acid (DNA) fragments generated by sequencing technologies to create a …

Pasa: leveraging population pangenome graph to scaffold prokaryote genome assemblies

VH Do, SH Nguyen, DQ Le, TT Nguyen… - Nucleic Acids …, 2024 - academic.oup.com
Whole genome sequencing has increasingly become the essential method for studying the
genetic mechanisms of antimicrobial resistance and for surveillance of drug-resistant …

Chromosome-level assembly of the Rangifer tarandus genome and validation of cervid and bovid evolution insights

W Poisson, J Prunier, A Carrier, I Gilbert… - BMC genomics, 2023 - Springer
Background Genome assembly into chromosomes facilitates several analyses including
cytogenetics, genomics and phylogenetics. Despite rapid development in bioinformatics …

Competitive Exclusion Bacterial Culture Derived from the Gut Microbiome of Nile Tilapia (Oreochromis niloticus) as a Resource to Efficiently Recover Probiotic Strains …

JF Melo-Bolívar, RY Ruiz Pardo, H Junca, HE Sidjabat… - Microorganisms, 2022 - mdpi.com
This study aims to mine a previously developed continuous-flow competitive exclusion
culture (CFCEC) originating from the Tilapia gut microbiome as a rational and efficient …

The Bioinformatic Applications of Hi-C and Linked Reads

L Jiang, MA Quail, J Fraser-Govi1… - Genomics …, 2024 - academic.oup.com
Long-range sequencing grants insight into additional genetic information beyond that which
can be accessed by both short reads and modern long-read technology. Several new …

Hi-C techniques: from genome assemblies to transcription regulation

H Šimková, AS Câmara… - Journal of Experimental …, 2024 - academic.oup.com
The invention of chromosome conformation capture (3C) techniques, in particular the key
method Hi-C providing genome-wide information about chromatin contacts, revolutionized …

Integration of fluorescence in situ hybridization and chromosome-length genome assemblies revealed synteny map for guinea pig, naked mole-rat, and human

SA Romanenko, SF Kliver, NA Serdyukova… - Scientific reports, 2023 - nature.com
Descriptions of karyotypes of many animal species are currently available. In addition, there
has been a significant increase in the number of sequenced genomes and an ever …

SynBioTools: a one-stop facility for searching and selecting synthetic biology tools

P Cai, S Liu, D Zhang, H Xing, M Han, D Liu, L Gong… - BMC …, 2023 - Springer
Background The rapid development of synthetic biology relies heavily on the use of
databases and computational tools, which are also developing rapidly. While many tool …