[HTML][HTML] Current uses and future perspectives of genomic technologies in clinical microbiology
I Bianconi, R Aschbacher, E Pagani - Antibiotics, 2023 - mdpi.com
Recent advancements in sequencing technology and data analytics have led to a
transformative era in pathogen detection and typing. These developments not only expedite …
transformative era in pathogen detection and typing. These developments not only expedite …
[HTML][HTML] Wastewater-based epidemiology of SARS-CoV-2 and other respiratory viruses: bibliometric tracking of the last decade and emerging research directions
The COVID-19 pandemic has prompted an overwhelming surge in research investigating
different aspects of the disease and its causative agent. In this study, we aim to discern …
different aspects of the disease and its causative agent. In this study, we aim to discern …
SARS-CoV-2 genomics and impact on clinical care for COVID-19
R Lorenzo-Redondo… - Journal of …, 2023 - academic.oup.com
The emergence and worldwide spread of SARS-CoV-2 during the COVID-19 pandemic
necessitated the adaptation and rapid deployment of viral WGS and analysis techniques that …
necessitated the adaptation and rapid deployment of viral WGS and analysis techniques that …
Increasing evolution, prevalence, and outbreaks for rift valley fever virus in the process of breaking geographical barriers
Z Wang, S Pei, R Ye, J Chen, N Cheng, M Zhao… - Science of The Total …, 2024 - Elsevier
Background Rift valley fever (RVF) is listed as one of prioritized diseases by WHO. This
study aims to describe RVF virus' landscape distribution globally, and to insight dynamics …
study aims to describe RVF virus' landscape distribution globally, and to insight dynamics …
[HTML][HTML] Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows
R Connor, M Shakya, DA Yarmosh, W Maier, R Martin… - Viruses, 2024 - mdpi.com
Genomic sequencing of clinical samples to identify emerging variants of SARS-CoV-2 has
been a key public health tool for curbing the spread of the virus. As a result, an …
been a key public health tool for curbing the spread of the virus. As a result, an …
[HTML][HTML] Integration of individualized and population-level molecular epidemiology data to model COVID-19 outcomes
T Ling-Hu, LM Simons, TJ Dean, E Rios-Guzman… - Cell Reports …, 2024 - cell.com
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants with enhanced
transmissibility and immune escape have emerged periodically throughout the coronavirus …
transmissibility and immune escape have emerged periodically throughout the coronavirus …
ViralFlow v1. 0—a computational workflow for streamlining viral genomic surveillance
AF da Silva, AM da Silva Neto… - NAR Genomics and …, 2024 - academic.oup.com
ViralFlow v1. 0 is a computational workflow developed for viral genomic surveillance.
Several key changes turned ViralFlow into a general-purpose reference-based genome …
Several key changes turned ViralFlow into a general-purpose reference-based genome …
[HTML][HTML] Update on the Phylodynamic and Genetic Variability of Marburg Virus
The COVID-19 pandemic has not only strained healthcare systems in Africa but has also
intensified the impact of emerging and re-emerging diseases. Specifically in Equatorial …
intensified the impact of emerging and re-emerging diseases. Specifically in Equatorial …
[HTML][HTML] Whole-Genome Sequencing and Mutation Analyses of SARS-CoV-2 Isolates from Indonesia
S Oktavianthi, AC Lages, R Kusuma, TS Kurniasih… - Pathogens, 2024 - mdpi.com
The SARS-CoV-2 infection that caused the COVID-19 pandemic has become a significant
public health concern. New variants with distinct mutations have emerged, potentially …
public health concern. New variants with distinct mutations have emerged, potentially …
Comparison of analytical performance and economic value of two biosurveillance methods for tracking SARS-COV-2 variants of concern
NP Pinkhover, KM Pontbriand, KP Fletcher… - Microbiology …, 2024 - Am Soc Microbiol
The development of biosurveillance programs with strong analytical performance and
economically accessible protocols is essential for monitoring viral pathogens. Throughout …
economically accessible protocols is essential for monitoring viral pathogens. Throughout …