Advancing fish breeding in aquaculture through genome functional annotation

IA Johnston, MP Kent, P Boudinot, M Looseley… - Aquaculture, 2024 - Elsevier
Genomics is increasingly applied in breeding programmes for farmed fish and shellfish
species around the world. However, current applications do not include information on …

Recent developments and future directions in meta-analysis of differential gene expression in livestock RNA-Seq

BN Keel, AK Lindholm-Perry - Frontiers in genetics, 2022 - frontiersin.org
Decreases in the costs of high-throughput sequencing technologies have led to continually
increasing numbers of livestock RNA-Seq studies in the last decade. Although the number of …

Advances in the discovery of genetic elements underlying longissimus dorsi muscle growth and development in the pig

Q Zeng, ZQ Du - Animal Genetics, 2023 - Wiley Online Library
As a major source of protein in human diets, pig meat plays a crucial role in ensuring global
food security. Key determinants of meat production refer to the chemical and physical …

AgAnimalGenomes: Browsers for viewing and manually annotating farm animal genomes

DA Triant, AT Walsh, GA Hartley, B Petry… - Mammalian …, 2023 - Springer
Current genome sequencing technologies have made it possible to generate highly
contiguous genome assemblies for non-model animal species. Despite advances in …

Recent advances in the genomic resources for sheep

SA Woolley, M Salavati, EL Clark - Mammalian Genome, 2023 - Springer
Sheep (Ovis aries) provide a vital source of protein and fibre to human populations. In
coming decades, as the pressures associated with rapidly changing climates increase …

Nutrigenomics in livestock: Potential role in physiological regulation and practical applications

JJ Loor - Animal Production Science, 2022 - CSIRO Publishing
The relationship among nutrition, health, and productivity of livestock is a continuously
changing interaction between environment and physiology. As such, understanding how the …

Single-Cell Sequencing Technology in Ruminant Livestock: Challenges and Opportunities

A Lyons, J Brown, KM Davenport - Current Issues in Molecular Biology, 2024 - mdpi.com
Advancements in single-cell sequencing have transformed the genomics field by allowing
researchers to delve into the intricate cellular heterogeneity within tissues at greater …

[PDF][PDF] Biodiversity biobanks: a landscape analysis

C Corrales, S Luciano, JJ Astrin - ARPHA Preprints, 2023 - preprints.arphahub.com
Biobanks are curated collections of biological samples that are preserved at the molecular
level, usually frozen, along with associated data, and managed to high scientific standards …

Non-synonymous variation and protein structure of candidate genes associated with selection in farm and wild populations of turbot (Scophthalmus maximus)

Ø Andersen, JA Rubiolo, D Pirolli, O Aramburu… - Scientific Reports, 2023 - nature.com
Non-synonymous variation (NSV) of protein coding genes represents raw material for
selection to improve adaptation to the diverse environmental scenarios in wild and livestock …

[HTML][HTML] A Comprehensive Allele Specific Expression Resource for the Equine Transcriptome

H Heath, S Peng, T Szmatola, S Ryan, R Bellone… - Research …, 2024 - ncbi.nlm.nih.gov
Background: Allele-specific expression (ASE) analysis provides a nuanced view of cis-
regulatory mechanisms affecting gene expression. Results: An equine ASE analysis was …