Human papillomavirus type 16 sub-lineages and integration in cancer

R Jackson, A Ortigas-Vásquez, I Zehbe - bioRxiv, 2020 - biorxiv.org
Our lab has been intrigued by the fact that viral genomes often take on the role of mobile
elements to perpetuate their existence in a complex organism's genome. Multiple DNA …

[图书][B] Analysis of the complexity of HBV-host junction sequences in patients with HBV-related hepatocellular carcinoma

S Lin - 2016 - search.proquest.com
Hepatocellular carcinoma (HCC) suffers from poor prognosis due to late detection and lack
of effective therapies. Chronic hepatitis B virus (HBV) infection is the major etiology of HCC …

DNA sequencing for clinical and public health virology: some assembly required

J Bartkus - Clinical Virology Manual, 2016 - Wiley Online Library
Recent advances in sequencing technology, coupled with the relatively small genomes of
viruses, make routine sequencing of entire genomes in clinical and public health settings …

Transcriptome sequencing for the detection of chimeric transcripts

HT Chu - Cancer Gene Profiling: Methods and Protocols, 2016 - Springer
The occurrence of chimeric transcripts has been reported in many cancer cells and seen as
potential biomarkers and therapeutic targets. Modern high-throughput sequencing …

Genomics Meets Cancer Immunotherapy

JC Castle, S Boegel, T Bukur, V Boisguerin… - … meets oncology: In …, 2014 - Springer
High-throughput cancer genomics and bioinformatics are revolutionizing our ability to profile
tumor samples. With next-generation sequencing (NGS) and high-performance computing …

Pathogen-host omics analyses of human papillomavirus type 16 sub-lineages in a human epithelial organoid model

R Jackson - 2019 - knowledgecommons.lakeheadu.ca
Pathogens such as human papillomaviruses (HPVs) have co-evolved with their hosts and
form a molecular basis for common diseases. Persistent infection with the “high-risk” HPV …

[HTML][HTML] Diagnostics and monitoring of chronic virus infections: evaluation of novel molecular methods and markers

E Virtanen - 2019 - helda.helsinki.fi
Chronic virus infection is a state where the virus persists in the body after primary infection.
Primary infection can be asymptomatic and may remain unnoticed, but gradual replication of …

[PDF][PDF] Detection and quantification of viral RNA in human tumors using open source pipeline: viGEN

K Bhuvaneshwar, L Song, S Madhavan, Y Gusev - researchgate.net
An estimated 17% of cancers worldwide are associated with infectious causes. The extent
and biological significance of viral presence/infection in actual tumor samples is generally …

Exploring novel coding and regulatory genomic features through integrative proteogenomics and a de novo assembly strategy

D Chacon Fajardo - 2018 - unsworks.unsw.edu.au
Since the last decade, next generation sequencing (NGS) technologies have revolutionised
the field of genomics in biomedical research. Outcomes have been enhanced by the …

RNA-Seq based decomposition of human cell lines and primary tumors for the identification and quantification of viral expression

T Bukur - 2017 - openscience.ub.uni-mainz.de
Around twenty percent of all cancer cases are contributed to infectious agents, mostly to
viruses. However, detection of viruses can be laborious, time-consuming, or require …