Converting Biomedical Text Annotated Resources into FAIR Research Objects with an Open Science Platform

A Kanterakis, N Kanakaris, M Koutoulakis, K Pitianou… - Applied Sciences, 2021 - mdpi.com
Today, there are excellent resources for the semantic annotation of biomedical text. These
resources span from ontologies, tools for NLP, annotators, and web services. Most of these …

Ontology Repository and Ontology-Based Services–Challenges, contributions and applications to biomedicine & agronomy

C Jonquet - 2019 - theses.hal.science
With the explosion of the number of ontologies and vocabularies available in the semantic
web, ontology libraries and repositories are mandatory to find and use them. Their …

[PDF][PDF] IAM at IberLEF 2022: NER of Species Mentions.

S Cossin, G Diallo, V Jouhet - IberLEF@ SEPLN, 2022 - ceur-ws.org
In this paper, we describe the approach and the results of our participation in task 1:
LivingNER-Species NER track (Species mention entity recognition) of the LivingNER shared …

Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts

G Tsueng, M Nanis, JT Fouquier, M Mayers… - …, 2020 - academic.oup.com
Motivation Biomedical literature is growing at a rate that outpaces our ability to harness the
knowledge contained therein. To mine valuable inferences from the large volume of …

Personalized Semantic Annotation Recommendations on Biomedical Content Through an Expanded Socio-Technical Approach [Personalized Semantic Annotation …

A Abbas, S Mbouadeu, T Hameed… - … on Biomedical Content …, 2023 - par.nsf.gov
There are huge on-going challenges to timely access of accurate online biomedical content
due to exponential growth of unstructured biomedical data. Therefore, semantic annotations …

[PDF][PDF] Semantically: a framework for structured biomedical content authoring and publishing

SF Mbouadeu, F Keshtkar, SAC Bukhari - 2021 International Semantic …, 2021 - par.nsf.gov
We demonstrate Semantically, an open-source framework that enables biomedical
researchers and authors at different expertise levels to write and publish biomedical …

Bioinformatics, Digital Pathology, and Computational Pathology for Surgical Pathologists

SK Mohanty, S Shafi, AV Parwani - Molecular Surgical Pathology, 2023 - Springer
Bioinformatics is a branch of science that refers to the management, acquisition,
manipulation, and presentation of complex biological data sets, while clinical informatics is …

Improving the accessibility of biomedical texts by semantic enrichment and definition expansion

P Accuosto, H Saggion - … del Lenguaje Natural. 2018; 61: 57-64., 2018 - repositori.upf.edu
We present work aimed at facilitating the comprehensibility of health-related English-
Spanish parallel texts by means of the semantic annotation of biomedical concepts and the …

Data integration in the rail domain

CR Morris - 2018 - etheses.bham.ac.uk
The exchange of information is crucial to the operation of railways; starting with the
distribution of timetables, information must constantly be exchanged in any railway network …

[PDF][PDF] ROMEDI, une terminologie médicale française pour la détection des médicaments en texte libre

S Cossin, R Loustau, V Jouhet, L Létinier… - Artificial Intelligence …, 2018 - researchgate.net
De nombreuses sources de données non structurées comme les dossiers patients
informatisés, les articles scientifiques, les recommandations de bonnes pratiques et les …