Applications of single-cell RNA sequencing in drug discovery and development

B Van de Sande, JS Lee, E Mutasa-Gottgens… - Nature Reviews Drug …, 2023 - nature.com
Single-cell technologies, particularly single-cell RNA sequencing (scRNA-seq) methods,
together with associated computational tools and the growing availability of public data …

The evolution of single-cell RNA sequencing technology and application: progress and perspectives

S Wang, ST Sun, XY Zhang, HR Ding, Y Yuan… - International Journal of …, 2023 - mdpi.com
As an emerging sequencing technology, single-cell RNA sequencing (scRNA-Seq) has
become a powerful tool for describing cell subpopulation classification and cell …

Large-scale foundation model on single-cell transcriptomics

M Hao, J Gong, X Zeng, C Liu, Y Guo, X Cheng… - Nature …, 2024 - nature.com
Large pretrained models have become foundation models leading to breakthroughs in
natural language processing and related fields. Developing foundation models for …

Dimensionality reduction and visualization of single-cell RNA-seq data with an improved deep variational autoencoder

J Jiang, J Xu, Y Liu, B Song, X Guo… - Briefings in …, 2023 - academic.oup.com
Single-cell RNA sequencing (scRNA-seq) is a revolutionary breakthrough that determines
the precise gene expressions on individual cells and deciphers cell heterogeneity and …

Rapid, One-Step Sample Processing for Label-Free Single-Cell Proteomics

SM Johnston, KGI Webber, X Xie… - Journal of the …, 2023 - ACS Publications
Sample preparation for single-cell proteomics is generally performed in a one-pot workflow
with multiple dispensing and incubation steps. These hours-long processes can be labor …

Stgnnks: identifying cell types in spatial transcriptomics data based on graph neural network, denoising auto-encoder, and k-sums clustering

L Peng, X He, X Peng, Z Li, L Zhang - Computers in Biology and Medicine, 2023 - Elsevier
Background: Spatial transcriptomics technologies fully utilize spatial location information,
tissue morphological features, and transcriptional profiles. Integrating these data can greatly …

STellaris: a web server for accurate spatial mapping of single cells based on spatial transcriptomics data

X Li, C Xiao, J Qi, W Xue, X Xu, Z Mu… - Nucleic Acids …, 2023 - academic.oup.com
Single-cell RNA sequencing (scRNA-seq) provides insights into gene expression
heterogeneities in diverse cell types underlying homeostasis, development and pathological …

xtrimogene: An efficient and scalable representation learner for single-cell rna-seq data

J Gong, M Hao, X Cheng, X Zeng… - Advances in …, 2024 - proceedings.neurips.cc
Advances in high-throughput sequencing technology have led to significant progress in
measuring gene expressions at the single-cell level. The amount of publicly available single …

LPCAT2 inhibits colorectal cancer progression via the PRMT1/SLC7A11 axis

N Cao, F Zhang, J Yin, J Zhang, X Bian, G Zheng, N Li… - Oncogene, 2024 - nature.com
Colorectal cancer (CRC) has a high degree of heterogeneity and identifying the genetic
information of individual tumor cells could help enhance our understanding of tumor biology …

Paraptosis: a non-classical paradigm of cell death for cancer therapy

C Xu, Y Lin, M Huang, X Zhang, P Wang… - Acta Pharmacologica …, 2024 - nature.com
Due to the sustained proliferative potential of cancer cells, inducing cell death is a potential
strategy for cancer therapy. Paraptosis is a mode of cell death characterized by endoplasmic …