[HTML][HTML] Tackling the challenges of matching biomedical ontologies

D Faria, C Pesquita, I Mott, C Martins, FM Couto… - Journal of biomedical …, 2018 - Springer
Background Biomedical ontologies pose several challenges to ontology matching due both
to the complexity of the biomedical domain and to the characteristics of the ontologies …

Semantic data integration

M Cheatham, C Pesquita - Handbook of big data technologies, 2017 - Springer
The growing volume, variety and complexity of data being collected for scientific purposes
presents challenges for data integration. For data to be truly useful, scientists need not only …

[PDF][PDF] Results of AML participation in OAEI 2018

D Faria, C Pesquita, B Balasubramani, T Tervo… - Proceedings of the 13th …, 2018 - par.nsf.gov
AgreementMakerLight (AML) is a system for automated ontology matching that is
characterized by its efficiency, extensibility, and ability to incorporate external knowledge. In …

Matching multiple ontologies to build a knowledge graph for personalized medicine

MC Silva, D Faria, C Pesquita - European Semantic Web Conference, 2022 - Springer
A rich biomedical knowledge graph can support the multi-domain data integration necessary
for the application of Artificial Intelligence models in personalised medicine. Constructing …

[PDF][PDF] AgreementMakerLight results for OAEI 2013.

D Faria, C Pesquita, E Santos, IF Cruz, FM Couto - OM, 2013 - dit.unitn.it
AgreementMakerLight (AML) is an automated ontology matching framework based on
element-level matching and the use of external resources as background knowledge. This …

[HTML][HTML] Automatic background knowledge selection for matching biomedical ontologies

D Faria, C Pesquita, E Santos, IF Cruz, FM Couto - PloS one, 2014 - journals.plos.org
Ontology matching is a growing field of research that is of critical importance for the semantic
web initiative. The use of background knowledge for ontology matching is often a key factor …

AML and AMLC results for OAEI 2019

D Faria, C Pesquita, T Tervo, FM Couto… - Proceedings of the 14th …, 2019 - par.nsf.gov
AgreementMakerLight (AML) is an ontology matching system designed with scalability,
extensibility and satisfiability as its primary guidelines, as well as an emphasis on the ability …

OAEI 2016 results of AML

D Faria, C Pesquita, BS Balasubramani… - … workshop on ontology …, 2016 - par.nsf.gov
AgreementMakerLight (AML) is an automated ontology matching system based primarily on
element-level matching and on the use of external resources as background knowledge …

Coordinating dissent as an alternative to consensus classification: insights from systematics for bio-ontologies

B Sterner, J Witteveen, N Franz - History and Philosophy of the Life …, 2020 - Springer
The collection and classification of data into meaningful categories is a key step in the
process of knowledge making. In the life sciences, the design of data discovery and …

[HTML][HTML] Improving the interoperability of biomedical ontologies with compound alignments

D Oliveira, C Pesquita - Journal of biomedical semantics, 2018 - Springer
Background Ontologies are commonly used to annotate and help process life sciences data.
Although their original goal is to facilitate integration and interoperability among …