Optical tweezers in single-molecule biophysics

CJ Bustamante, YR Chemla, S Liu… - Nature Reviews Methods …, 2021 - nature.com
Optical tweezers have become the method of choice in single-molecule manipulation
studies. In this Primer, we first review the physical principles of optical tweezers and the …

Single-molecule analysis and engineering of DNA motors

S Mohapatra, CT Lin, XA Feng, A Basu, T Ha - Chemical reviews, 2019 - ACS Publications
Molecular motors are diverse enzymes that transduce chemical energy into mechanical
work and, in doing so, perform critical cellular functions such as DNA replication and …

The post-PAM interaction of RNA-guided spCas9 with DNA dictates its target binding and dissociation

Q Zhang, F Wen, S Zhang, J Jin, L Bi, Y Lu, M Li… - Science …, 2019 - science.org
Cas9 is an RNA-guided endonuclease that targets complementary DNA for cleavage and
has been repurposed for many biological usages. Cas9 activities are governed by its direct …

Dynamics of Staphylococcus aureus Cas9 in DNA target Association and Dissociation

S Zhang, Q Zhang, XM Hou, L Guo, F Wang, L Bi… - EMBO …, 2020 - embopress.org
Abstract Staphylococcus aureus Cas9 (SaCas9) is an RNA‐guided endonuclease that
targets complementary DNA adjacent to a protospacer adjacent motif (PAM) for cleavage. Its …

Non-homologous end-joining at challenged replication forks: an RNA connection?

C Audoynaud, S Vagner, S Lambert - Trends in Genetics, 2021 - cell.com
Defective DNA replication, known as 'replication stress', is a source of DNA damage, a
hallmark of numerous human diseases, including cancer, developmental defect …

DNA helicase–polymerase coupling in bacteriophage DNA replication

CY Lo, Y Gao - Viruses, 2021 - mdpi.com
Bacteriophages have long been model systems to study the molecular mechanisms of DNA
replication. During DNA replication, a DNA helicase and a DNA polymerase cooperatively …

Towards biological applications of nanophotonic tweezers

RP Badman, F Ye, MD Wang - Current opinion in chemical biology, 2019 - Elsevier
Optical trapping (synonymous with optical tweezers) has become a core biophysical
technique widely used for interrogating fundamental biological processes on size scales …

ALT control, delete: FANCM as an anti-cancer target in Alternative Lengthening of Telomeres

JJ O'Rourke, R Bythell-Douglas, EA Dunn, AJ Deans - Nucleus, 2019 - Taylor & Francis
Break-induced replication is a specific type of DNA repair that has a co-opted role in
telomere extension by telomerase-negative cancer cells. This Alternative Lengthening of …

Joint Efforts of Replicative Helicase and SSB Ensure Inherent Replicative Tolerance of G‐Quadruplex

L Guo, Y Bao, Y Zhao, Z Ren, L Bi, X Zhang… - Advanced …, 2024 - Wiley Online Library
Abstract G‐quadruplex (G4) is a four‐stranded noncanonical DNA structure that has long
been recognized as a potential hindrance to DNA replication. However, how replisomes …

Single-molecule insights into the dynamics of replicative helicases

RR Spinks, LM Spenkelink, NE Dixon… - Frontiers in Molecular …, 2021 - frontiersin.org
Helicases are molecular motors that translocate along single-stranded DNA and unwind
duplex DNA. They rely on the consumption of chemical energy from nucleotide hydrolysis to …