Adaptive template transformer for mitochondria segmentation in electron microscopy images

Y Pan, N Luo, R Sun, M Meng… - Proceedings of the …, 2023 - openaccess.thecvf.com
Mitochondria, as tiny structures within the cell, are of significant importance to study cell
functions for biological and clinical analysis. And exploring how to automatically segment …

[HTML][HTML] Segmentation in large-scale cellular electron microscopy with deep learning: A literature survey

A Aswath, A Alsahaf, BNG Giepmans… - Medical image analysis, 2023 - Elsevier
Electron microscopy (EM) enables high-resolution imaging of tissues and cells based on 2D
and 3D imaging techniques. Due to the laborious and time-consuming nature of manual …

Structure-decoupled adaptive part alignment network for domain adaptive mitochondria segmentation

R Sun, H Mai, N Luo, T Zhang, Z Xiong… - … Conference on Medical …, 2023 - Springer
Existing methods for unsupervised domain adaptive mitochondria segmentation perform
feature alignment via adversarial learning, and achieve promising performance. However …

Electron microscopy images as set of fragments for mitochondrial segmentation

N Luo, R Sun, Y Pan, T Zhang, F Wu - Proceedings of the AAAI …, 2024 - ojs.aaai.org
Automatic mitochondrial segmentation enjoys great popularity with the development of deep
learning. However, the coarse prediction raised by the presence of regular 3D grids in …

Advanced deep networks for 3D mitochondria instance segmentation

M Li, C Chen, X Liu, W Huang… - 2022 IEEE 19th …, 2022 - ieeexplore.ieee.org
Mitochondria instance segmentation from electron microscopy (EM) images has seen
notable progress since the introduction of deep learning methods. In this paper, we propose …

Current Progress and Challenges in Large-Scale 3D Mitochondria Instance Segmentation

D Franco-Barranco, Z Lin, WD Jang… - IEEE transactions on …, 2023 - ieeexplore.ieee.org
In this paper, we present the results of the MitoEM challenge on mitochondria 3D instance
segmentation from electron microscopy images, organized in conjunction with the IEEE-ISBI …

Domain adaptive mitochondria segmentation via enforcing inter-section consistency

W Huang, X Liu, Z Cheng, Y Zhang, Z Xiong - International Conference on …, 2022 - Springer
Deep learning-based methods for mitochondria segmentation require sufficient annotations
on Electron Microscopy (EM) volumes, which are often expensive and time-consuming to …

Mask rearranging data augmentation for 3d mitochondria segmentation

Q Chen, M Li, J Li, B Hu, Z Xiong - International Conference on Medical …, 2022 - Springer
Abstract 3D mitochondria segmentation in electron microscopy (EM) images has achieved
significant progress. However, existing learning-based methods with high performance …

Evidential Uncertainty-Guided Mitochondria Segmentation for 3D EM Images

R Shi, L Duan, T Huang, T Jiang - … of the AAAI Conference on Artificial …, 2024 - ojs.aaai.org
Recent advances in deep learning have greatly improved the segmentation of mitochondria
from Electron Microscopy (EM) images. However, suffering from variations in mitochondrial …

3D Mitochondria Instance Segmentation with Spatio-Temporal Transformers

O Thawakar, RM Anwer, J Laaksonen, O Reiner… - … Conference on Medical …, 2023 - Springer
Accurate 3D mitochondria instance segmentation in electron microscopy (EM) is a
challenging problem and serves as a prerequisite to empirically analyze their distributions …