Genetic determinants of risk in autoimmune pulmonary alveolar proteinosis

S Sakaue, E Yamaguchi, Y Inoue, M Takahashi… - Nature …, 2021 - nature.com
Pulmonary alveolar proteinosis (PAP) is a devastating lung disease caused by abnormal
surfactant homeostasis, with a prevalence of 6–7 cases per million population worldwide …

[PDF][PDF] Genome-wide association study identifies risk loci within the major histocompatibility complex region for Hunner-type interstitial cystitis

Y Akiyama, K Sonehara, D Maeda, H Katoh, T Naito… - Cell Reports …, 2023 - cell.com
Hunner-type interstitial cystitis (HIC) is a rare, chronic inflammatory disease of the urinary
bladder with unknown etiology and genetic background. Here, we conduct a genome-wide …

Polygenic adaptation leads to a higher reproductive fitness of native Tibetans at high altitude

Y He, Y Guo, W Zheng, T Yue, H Zhang, B Wang… - Current Biology, 2023 - cell.com
The adaptation of Tibetans to high-altitude environments has been studied extensively.
However, the direct assessment of evolutionary adaptation, ie, the reproductive fitness of …

A common deletion at BAK1 reduces enhancer activity and confers risk of intracranial germ cell tumors

K Sonehara, Y Kimura, Y Nakano, T Ozawa… - Nature …, 2022 - nature.com
Intracranial germ cell tumors (IGCTs) are rare brain neoplasms that mainly occur in children
and adolescents with a particularly high incidence in East Asian populations. Here, we …

Genetic footprints of assortative mating in the Japanese population

K Yamamoto, K Sonehara, S Namba… - Nature Human …, 2023 - nature.com
Assortative mating (AM) is a pattern characterized by phenotypic similarities between mating
partners. Detecting the evidence of AM has been challenging due to the lack of large-scale …

Differences in local population history at the finest level: the case of the Estonian population

V Pankratov, F Montinaro, A Kushniarevich… - European Journal of …, 2020 - nature.com
Several recent studies detected fine-scale genetic structure in human populations. Hence,
groups conventionally treated as single populations harbour significant variation in terms of …

Genetic variants in transcription factor binding sites in humans: triggered by natural selection and triggers of diseases

CC Tseng, MC Wong, WT Liao, CJ Chen… - International Journal of …, 2021 - mdpi.com
Variants of transcription factor binding sites (TFBSs) constitute an important part of the
human genome. Current evidence demonstrates close links between nucleotides within …

GWAS of five gynecologic diseases and cross-trait analysis in Japanese

T Masuda, SK Low, M Akiyama, M Hirata… - European Journal of …, 2020 - nature.com
We performed genome-wide association studies of five gynecologic diseases using data of
46,837 subjects (5236 uterine fibroid, 645 endometriosis, 647 ovarian cancer (OC), 909 …

Empirical evaluation of variant calling accuracy using ultra-deep whole-genome sequencing data

T Kishikawa, Y Momozawa, T Ozeki, T Mushiroda… - Scientific reports, 2019 - nature.com
In the design of whole-genome sequencing (WGS) studies, sequencing depth is a crucial
parameter to define variant calling accuracy and study cost, with no standard …

Detection of selection signatures for response to Aleutian mink disease virus infection in American mink

K Karimi, AH Farid, S Myles, Y Miar - Scientific reports, 2021 - nature.com
Aleutian disease (AD) is the most significant health issue for farmed American mink. The
objective of this study was to identify the genomic regions subjected to selection for …