Gut microbiome, big data and machine learning to promote precision medicine for cancer

G Cammarota, G Ianiro, A Ahern, C Carbone… - Nature reviews …, 2020 - nature.com
The gut microbiome has been implicated in cancer in several ways, as specific microbial
signatures are known to promote cancer development and influence safety, tolerability and …

Machine learning techniques for personalised medicine approaches in immune-mediated chronic inflammatory diseases: applications and challenges

J Peng, EC Jury, P Dönnes, C Ciurtin - Frontiers in pharmacology, 2021 - frontiersin.org
In the past decade, the emergence of machine learning (ML) applications has led to
significant advances towards implementation of personalised medicine approaches for …

Environmental factors shaping the gut microbiome in a Dutch population

R Gacesa, A Kurilshikov, A Vich Vila, T Sinha… - Nature, 2022 - nature.com
The gut microbiome is associated with diverse diseases,–, but a universal signature of a
healthy or unhealthy microbiome has not been identified, and there is a need to understand …

Long-term dietary patterns are associated with pro-inflammatory and anti-inflammatory features of the gut microbiome

LA Bolte, AV Vila, F Imhann, V Collij, R Gacesa… - Gut, 2021 - gut.bmj.com
Objective The microbiome directly affects the balance of pro-inflammatory and anti-
inflammatory responses in the gut. As microbes thrive on dietary substrates, the question …

Impact of commonly used drugs on the composition and metabolic function of the gut microbiota

A Vich Vila, V Collij, S Sanna, T Sinha, F Imhann… - Nature …, 2020 - nature.com
The human gut microbiota has now been associated with drug responses and efficacy, while
chemical compounds present in these drugs can also impact the gut bacteria. However …

[HTML][HTML] Host genetic regulation of human gut microbial structural variation

DV Zhernakova, D Wang, L Liu, S Andreu-Sánchez… - Nature, 2024 - nature.com
Although the impact of host genetics on gut microbial diversity and the abundance of specific
taxa is well established,,,,–, little is known about how host genetics regulates the genetic …

Gut microbial co-abundance networks show specificity in inflammatory bowel disease and obesity

L Chen, V Collij, M Jaeger… - Nature …, 2020 - nature.com
The gut microbiome is an ecosystem that involves complex interactions. Currently, our
knowledge about the role of the gut microbiome in health and disease relies mainly on …

Location-specific signatures of Crohn's disease at a multi-omics scale

CG Gonzalez, RH Mills, Q Zhu, C Sauceda, R Knight… - Microbiome, 2022 - Springer
Background Crohn's disease (CD), an inflammatory bowel disease (IBD) subtype, results
from pathologic interactions between host cells and its resident gut microbes. CD manifests …

Role of probiotics in the management of COVID-19: A computational perspective

QV Nguyen, LC Chong, YY Hor, LC Lew, IA Rather… - Nutrients, 2022 - mdpi.com
Coronavirus disease 2019 (COVID-19) was declared a pandemic at the beginning of 2020,
causing millions of deaths worldwide. Millions of vaccine doses have been administered …

16S rRNA and metagenomic shotgun sequencing data revealed consistent patterns of gut microbiome signature in pediatric ulcerative colitis

W Zuo, B Wang, X Bai, Y Luan, Y Fan, S Michail… - Scientific reports, 2022 - nature.com
Dysbiosis of human gut microbiota has been reported in association with ulcerative colitis
(UC) in both children and adults using either 16S rRNA gene or shotgun sequencing data …