[HTML][HTML] Relocalization of translation termination and ribosome recycling factors to stress granules coincides with elevated stop-codon readthrough and reinitiation …

DS Makeeva, CL Riggs, AV Burakov, PA Ivanov… - Cells, 2023 - mdpi.com
Upon oxidative stress, mammalian cells rapidly reprogram their translation. This is
accompanied by the formation of stress granules (SGs), cytoplasmic ribonucleoprotein …

Protein complexes in cells by AI‐assisted structural proteomics

FJ O'Reilly, A Graziadei, C Forbrig… - Molecular Systems …, 2023 - embopress.org
Accurately modeling the structures of proteins and their complexes using artificial
intelligence is revolutionizing molecular biology. Experimental data enable a candidate …

[HTML][HTML] A global screen for assembly state changes of the mitotic proteome by SEC-SWATH-MS

M Heusel, M Frank, M Köhler, S Amon, F Frommelt… - Cell systems, 2020 - cell.com
Living systems integrate biochemical reactions that determine the functional state of each
cell. Reactions are primarily mediated by proteins. In proteomic studies, these have been …

SPOP-mutant prostate cancer: Translating fundamental biology into patient care

T Bernasocchi, JPP Theurillat - Cancer letters, 2022 - Elsevier
Comprehensive cancer genome studies have revealed genetically-defined subtypes of
prostate cancer with distinct truncal driver mutations. Because prostate cancer has been …

The DifferentialNet database of differential protein–protein interactions in human tissues

O Basha, R Shpringer, CM Argov… - Nucleic acids …, 2018 - academic.oup.com
DifferentialNet is a novel database that provides users with differential interactome analysis
of human tissues (http://netbio. bgu. ac. il/diffnet/). Users query DifferentialNet by protein, and …

Emerging mass spectrometry-based proteomics methodologies for novel biomedical applications

LK Pino, J Rose, A O'Broin, S Shah… - Biochemical Society …, 2020 - portlandpress.com
Research into the basic biology of human health and disease, as well as translational
human research and clinical applications, all benefit from the growing accessibility and …

Comparative structural analysis of 20S proteasome ortholog protein complexes by native mass spectrometry

S Vimer, G Ben-Nissan, D Morgenstern… - ACS Central …, 2020 - ACS Publications
Ortholog protein complexes are responsible for equivalent functions in different organisms.
However, during evolution, each organism adapts to meet its physiological needs and the …

[HTML][HTML] The epitranscriptome in stem cell biology and neural development

C Vissers, A Sinha, G Ming, H Song - Neurobiology of disease, 2020 - Elsevier
The blossoming field of epitranscriptomics has recently garnered attention across many
fields by findings that chemical modifications on RNA have immense biological …

[HTML][HTML] Maximizing binary interactome mapping with a minimal number of assays

SG Choi, J Olivet, P Cassonnet, PO Vidalain… - Nature …, 2019 - nature.com
Complementary assays are required to comprehensively map complex biological entities
such as genomes, proteomes and interactome networks. However, how various assays can …

Time to change: A systems pharmacology approach to disentangle mechanisms of drug-induced mitochondrial toxicity

CA Hoogstraten, JJ Lyon, JAM Smeitink… - Pharmacological …, 2023 - ASPET
An increasing number of commonly prescribed drugs are known to interfere with
mitochondrial function, which is associated with almost half of all Food and Drug …