Advances in typing and identification of foodborne pathogens

X Wei, X Zhao - Current Opinion in Food Science, 2021 - Elsevier
The threats to food safety risks posed by foodborne pathogens have seriously endangered
human health and economic stability. The methods employed for fast and efficient detection …

No Assembly Required: Using BTyper3 to Assess the Congruency of a Proposed Taxonomic Framework for the Bacillus cereus Group With Historical Typing Methods

LM Carroll, RA Cheng, J Kovac - Frontiers in Microbiology, 2020 - frontiersin.org
The Bacillus cereus group, also known as B. cereus sensu lato (sl), is a species complex
comprising numerous closely related lineages, which vary in their ability to cause illness in …

Comparative Analysis of Tools and Approaches for Source Tracking Listeria monocytogenes in a Food Facility Using Whole-Genome Sequence Data

B Jagadeesan, L Baert, M Wiedmann… - Frontiers in …, 2019 - frontiersin.org
As WGS is increasingly used by food industry to characterize pathogen isolates, users are
challenged by the variety of analysis approaches available, ranging from methods that …

Genetic diversity of Salmonella enterica isolated over 13 years from raw California almonds and from an almond orchard

A Moyne, OU Lawal, J Gauthier, I Kukavica-Ibrulj… - Plos one, 2023 - journals.plos.org
A comparative genomic analysis was conducted for 171 Salmonella isolates recovered from
raw inshell almonds and raw almond kernels between 2001 and 2013 and for 30 …

Precision food safety: a systems approach to food safety facilitated by genomics tools

J Kovac, H den Bakker, LM Carroll… - TrAC Trends in Analytical …, 2017 - Elsevier
Genomics and related tools are beginning to have a tremendous impact on food safety by
allowing for a more precise approach to pathogen detection, characterization, and …

Outbreak of Multidrug-Resistant Salmonella Heidelberg Infections Linked to Dairy Calf Exposure, United States, 2015–2018

M Nichols, L Gollarza, D Sockett, N Aulik… - Foodborne …, 2022 - liebertpub.com
In August 2016, the Wisconsin Department of Health Services notified the US Centers for
Disease Control and Prevention of multidrug-resistant (MDR) Salmonella enterica serovar …

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively …

B Bogaerts, S Nouws, B Verhaegen… - Microbial …, 2021 - microbiologyresearch.org
Whole genome sequencing (WGS) enables complete characterization of bacterial
pathogenic isolates at single nucleotide resolution, making it the ultimate tool for routine …

[HTML][HTML] Phenotypic and genotypic characterization of Enterobacteriaceae producing oxacillinase-48–like carbapenemases, United States

JD Lutgring, W Zhu, TJB de Man, JJ Avillan… - Emerging infectious …, 2018 - ncbi.nlm.nih.gov
Abstract Oxacillinase (OXA)–48–like carbapenemases remain relatively uncommon in the
United States. We performed phenotypic and genotypic characterization of 30 …

[HTML][HTML] Human salmonellosis outbreak linked to Salmonella Typhimurium epidemic in wild songbirds, United States, 2020–2021

K Patel, GS Stapleton, RT Trevejo… - Emerging Infectious …, 2023 - ncbi.nlm.nih.gov
Salmonella infection causes epidemic death in wild songbirds, with potential to spread to
humans. In February 2021, public health officials in Oregon and Washington, USA, isolated …

Bacterial typing methods from past to present: A comprehensive overview

AA Ramadan - Gene Reports, 2022 - Elsevier
Microbial typing (also known as “fingerprinting” or “characterization”) is a tool employed for
years to identify organisms within a species. Different methods were developed, from the …