Biological sequence classification: A review on data and general methods

C Ao, S Jiao, Y Wang, L Yu, Q Zou - Research, 2022 - spj.science.org
With the rapid development of biotechnology, the number of biological sequences has
grown exponentially. The continuous expansion of biological sequence data promotes the …

Evaluation of different computational methods on 5-methylcytosine sites identification

H Lv, ZM Zhang, SH Li, JX Tan, W Chen… - Briefings in …, 2020 - academic.oup.com
Methylcytosine (m5C) plays an extremely important role in the basic biochemical process.
With the great increase of identified m5C sites in a wide variety of organisms, their …

[PDF][PDF] Enhanced data security of communication system using combined encryption and steganography

HTS ALRikabi, HT Hazim - iJIM, 2021 - lib.uowasit.edu.iq
Data security has become a paramount necessity and more obligation in daily life. Most of
our systems can be hacked, and it causes very high risks to our confidential files inside the …

Gene2vec: gene subsequence embedding for prediction of mammalian N6-methyladenosine sites from mRNA

Q Zou, P Xing, L Wei, B Liu - Rna, 2019 - rnajournal.cshlp.org
N 6-Methyladenosine (m6A) refers to methylation modification of the adenosine nucleotide
acid at the nitrogen-6 position. Many conventional computational methods for identifying N 6 …

MK-FSVM-SVDD: a multiple kernel-based fuzzy SVM model for predicting DNA-binding proteins via support vector data description

Y Zou, H Wu, X Guo, L Peng, Y Ding… - Current …, 2021 - ingentaconnect.com
Background: Detecting DNA-binding proteins (DBPs) based on biological and chemical
methods is time-consuming and expensive. Objective: In recent years, the rise of …

Meta-4mCpred: a sequence-based meta-predictor for accurate DNA 4mC site prediction using effective feature representation

B Manavalan, S Basith, TH Shin, L Wei… - Molecular Therapy-Nucleic …, 2019 - cell.com
DNA N4-methylcytosine (4mC) is an important genetic modification and plays crucial roles in
differentiation between self and non-self DNA and in controlling DNA replication, cell cycle …

Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely occurring RNA modifications

Z Song, D Huang, B Song, K Chen, Y Song… - Nature …, 2021 - nature.com
Recent studies suggest that epi-transcriptome regulation via post-transcriptional RNA
modifications is vital for all RNA types. Precise identification of RNA modification sites is …

SDM6A: a web-based integrative machine-learning framework for predicting 6mA sites in the rice genome

S Basith, B Manavalan, TH Shin, G Lee - Molecular Therapy-Nucleic Acids, 2019 - cell.com
DNA N 6-adenine methylation (6mA) is an epigenetic modification in prokaryotes and
eukaryotes. Identifying 6mA sites in rice genome is important in rice epigenetics and …

iMRM: a platform for simultaneously identifying multiple kinds of RNA modifications

K Liu, W Chen - Bioinformatics, 2020 - academic.oup.com
Motivation RNA modifications play critical roles in a series of cellular and developmental
processes. Knowledge about the distributions of RNA modifications in the transcriptomes …

mACPpred: a support vector machine-based meta-predictor for identification of anticancer peptides

V Boopathi, S Subramaniyam, A Malik, G Lee… - International journal of …, 2019 - mdpi.com
Anticancer peptides (ACPs) are promising therapeutic agents for targeting and killing cancer
cells. The accurate prediction of ACPs from given peptide sequences remains as an open …