[HTML][HTML] Immunoinformatics approach in designing a novel vaccine using epitopes from all the structural proteins of SARS-CoV-2

LRM Herrera - Biomedical and Pharmacology Journal, 2020 - biomedpharmajournal.org
The rapid transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
has resulted to the death of hundreds of thousands of people worldwide. With the …

Development of immune-specific interaction potentials and their application in the multi-agent-system VaccImm

AL Woelke, J von Eichborn, MS Murgueitio, CL Worth… - PloS one, 2011 - journals.plos.org
Peptide vaccination in cancer therapy is a promising alternative to conventional methods.
However, the parameters for this personalized treatment are difficult to access …

Matrix and agent-based modeling of threats to a diamond-backed terrapin population

B Levy, K Windoloski, J Ludlam - Mathematical Biosciences, 2021 - Elsevier
Population models are important tools for evaluating human impacts and potential
management approaches on declining species. However, often studies are limited by …

On the use of gillespie stochastic simulation algorithm in a model of the human immune system response to the yellow fever vaccine

MP Xavier, CRB Bonin, RW dos Santos… - … on Bioinformatics and …, 2017 - ieeexplore.ieee.org
The Human Immune System (HIS) plays a fundamental role in the defense of the body
against diseases. However, the multi-scale interactions among several of its components …

Model refinement through high-performance computing: an agent-based HIV example

D Perrin, HJ Ruskin, M Crane - Immunome research, 2010 - Springer
Abstract Background Recent advances in Immunology highlighted the importance of local
properties on the overall progression of HIV infection. In particular, the gastrointestinal tract …

Modelling cell surface dynamics and cell–cell interactions using Cell Studio: A three-dimensional visualization tool based on gaming technology

A Liberman, M Mussel, D Kario… - Journal of the …, 2019 - royalsocietypublishing.org
Predictive modelling of complex biological systems and biophysical interactions requires the
inclusion of multiple nano-and micro-scale events. In many scenarios, however, numerical …

The Wound Environment Agent-based Model (WEABM): a digital twin platform for characterization and complex therapeutic discovery for volumetric muscle loss

C Cockrell, Y Vodovotz, R Zamora, G An - bioRxiv, 2024 - biorxiv.org
Abstract Volumetric Muscle Loss (VML) injuries are characterized by significant loss of
muscle mass, usually due to trauma or surgical resection, often with a residual open wound …

[PDF][PDF] Agent-based simulation of the immune system

N Fachada - Master's thesis, Instituto Superior Técnico, Lisboa …, 2008 - researchgate.net
Computational models of the immune system have several applications, such as theory
testing and validation, or as a complement to first stages of drug testing. The majority of …

Definition of an agent-based model of the autoimmune response in Type 1 diabetes

IV Martínez, ME Hernando, EJ Gómez… - 7th Iberian …, 2012 - ieeexplore.ieee.org
This work describes the architecture of an agent based computer model that simulates the
autoimmune response in Type 1 diabetes in a three-dimensional cubic volume representing …

Multi-scale simulation of T helper lymphocyte differentiation

P Tieri, V Prana, T Colombo, D Santoni… - … in Bioinformatics and …, 2014 - Springer
The complex differentiation process of the CD4+ T helper lymphocytes shapes the form and
the range of the immune response to different antigenic challenges. Few mathematical and …