COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning

A Huffman, E Ong, J Hur, A D'Mello… - Briefings in …, 2022 - academic.oup.com
Rational vaccine design, especially vaccine antigen identification and optimization, is critical
to successful and efficient vaccine development against various infectious diseases …

Extracting adverse drug events from clinical Notes: A systematic review of approaches used

S Modi, KA Kasmiran, NM Sharef… - Journal of Biomedical …, 2024 - Elsevier
Background An adverse drug event (ADE) is any unfavorable effect that occurs due to the
use of a drug. Extracting ADEs from unstructured clinical notes is essential to biomedical text …

[HTML][HTML] Construction of a knowledge graph for breast cancer diagnosis based on Chinese electronic medical records: development and usability study

X Li, S Sun, T Tang, J Lu, L Zhang, J Yin… - BMC Medical Informatics …, 2023 - Springer
Abstract Background Electronic medical records (EMRs) contain a wealth of information
related to breast cancer diagnosis and treatment. Extracting relevant features from these …

Drug safety data curation and modeling in ChEMBL: boxed warnings and withdrawn drugs

FMI Hunter, AP Bento, N Bosc, A Gaulton… - Chemical Research …, 2021 - ACS Publications
The safety of marketed drugs is an ongoing concern, with some of the more frequently
prescribed medicines resulting in serious or life-threatening adverse effects in some …

Text Mining Protocol to Retrieve Significant Drug–Gene Interactions from PubMed Abstracts

S Anand, OR Iyyappan, S Manoharan, D Anand… - Biomedical Text …, 2022 - Springer
Genes and proteins form the basis of all cellular processes and ensure a smooth functioning
of the human system. The diseases caused in humans can be either genetic in nature or …

A Rule‐Based Inference Framework to Explore and Explain the Biological Related Mechanisms of Potential Drug‐Drug Interactions

A Noor, A Assiri - Computational and Mathematical Methods in …, 2022 - Wiley Online Library
As more drugs are developed and the incidence of polypharmacy increases, it is becoming
critically important to anticipate potential DDIs before they occur in the clinic, along with …

Integrating mechanistic information to predict drug-drug interactions and associated relevance for decision support

A Noor - 2022 IEEE International IOT, Electronics and …, 2022 - ieeexplore.ieee.org
While computational methods offer great potential in predicting drug-drug interactions
(DDIs), such predictions as of yet have limited utility in supporting clinical decision-making; …

Harnessing transformers for detecting adverse drug reaction and customized causality explanation using generative ai

A Bera, R Das, S Ghosh, R Chakraborty… - 2023 7th …, 2023 - ieeexplore.ieee.org
Pharmacovigilance plays an important role in monitoring safety of pharmaceutical products.
There is an abundance of unstructured data available in social media and online reviews …

Leveraging machine learning, natural language processing, and deep learning in drug safety and pharmacovigilance

M Munsaka, M Liu, Y Xing, H Yang - Data Science, AI, and …, 2022 - taylorfrancis.com
This chapter will provide an overview of some of these new developments including big
data, artificial intelligence, machine learning, and deep learning as they pertain to drug …

OnSIDES (ON-label SIDE effectS resource) Database: Extracting Adverse Drug Events from Drug Labels using Natural Language Processing Models

Y Tanaka, HY Chen, P Belloni, U Gisladottir, J Kefeli… - medRxiv, 2024 - medrxiv.org
Adverse drug events (ADEs) are the fourth leading cause of death in the US and cost billions
of dollars annually in increased healthcare costs. However, few machine-readable …