Brain-derived neurotrophic factor (BDNF) epigenomic modifications and brain-related phenotypes in humans: A systematic review

A Treble-Barna, LW Heinsberg, Z Stec… - Neuroscience & …, 2023 - Elsevier
Epigenomic modifications of the brain-derived neurotrophic factor (BDNF) gene have been
postulated to underlie the pathogenesis of neurodevelopmental, psychiatric, and …

Challenges and perspectives in computational deconvolution of genomics data

LX Garmire, Y Li, Q Huang, C Xu, SA Teichmann… - Nature …, 2024 - nature.com
Deciphering cell-type heterogeneity is crucial for systematically understanding tissue
homeostasis and its dysregulation in diseases. Computational deconvolution is an efficient …

[HTML][HTML] A narrative review of the epigenetics of post-traumatic stress disorder and post-traumatic stress disorder treatment

L Cao-Lei, D Saumier, J Fortin, A Brunet - Frontiers in psychiatry, 2022 - frontiersin.org
Epigenetic research in post-traumatic stress disorder (PTSD) is essential, given that
environmental stressors and fear play such a crucial role in its development. As such, it may …

[HTML][HTML] The application of epiphenotyping approaches to DNA methylation array studies of the human placenta

A Khan, AM Inkster, MS Peñaherrera, S King… - Epigenetics & …, 2023 - Springer
Background Genome-wide DNA methylation (DNAme) profiling of the placenta with Illumina
Infinium Methylation bead arrays is often used to explore the connections between in utero …

[HTML][HTML] Cigarette smoking and e-cigarette use induce shared DNA methylation changes linked to carcinogenesis

C Herzog, A Jones, I Evans, JR Raut, M Zikan… - Cancer Research, 2024 - AACR
Tobacco use is a major modifiable risk factor for adverse health outcomes, including cancer,
and elicits profound epigenetic changes thought to be associated with long-term cancer risk …

[HTML][HTML] Epigenetic regulation of estrogen receptor genes' expressions in adipose tissue in the course of obesity

K Koźniewski, M Wąsowski, MI Jonas, W Lisik… - International Journal of …, 2022 - mdpi.com
Estrogen affects adipose tissue function. Therefore, this study aimed at assessing changes
in the transcriptional activity of estrogen receptor (ER) α and β genes (ESR1 and ESR2 …

[HTML][HTML] A comprehensive map of the aging blood methylome in humans

K Seale, A Teschendorff, AP Reiner, S Voisin, N Eynon - Genome Biology, 2024 - Springer
Background During aging, the human methylome undergoes both differential and variable
shifts, accompanied by increased entropy. The distinction between variably methylated …

[HTML][HTML] Quantifying the proportion of different cell types in the human cortex using DNA methylation profiles

E Hannon, EL Dempster, JP Davies, B Chioza… - BMC biology, 2024 - Springer
Background Due to interindividual variation in the cellular composition of the human cortex,
it is essential that covariates that capture these differences are included in epigenome-wide …

[HTML][HTML] CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes

I Unterman, D Avrahami, E Katsman, TJ Triche Jr… - Genome biology, 2024 - Springer
Deconvolution methods infer quantitative cell type estimates from bulk measurement of
mixed samples including blood and tissue. DNA methylation sequencing measures multiple …

Methylome-wide association study of anxiety disorders

JM Hettema, EJCG van den Oord, M Zhao, LY Xie… - Molecular …, 2023 - nature.com
Anxiety Disorders (ANX) such as panic disorder, generalized anxiety disorder, and phobias,
are highly prevalent conditions that are moderately heritable. Evidence suggests that DNA …