Genomics‐assisted breeding: the next‐generation wheat breeding era

C Sun, H Hu, Y Cheng, X Yang, Q Qiao… - Plant …, 2023 - Wiley Online Library
Common wheat provides approximately 20% of the total dietary calorie intake of human
beings. Recent technological advances in whole‐genome sequencing and their application …

[HTML][HTML] Transposable elements orchestrate subgenome-convergent and-divergent transcription in common wheat

Y Zhang, Z Li, J Liu, Y Zhang, L Ye, Y Peng… - Nature …, 2022 - nature.com
The success of common wheat as a global staple crop was largely attributed to its genomic
diversity and redundancy due to the merge of different genomes, giving rise to the major …

Genome accessibility dynamics in response to phosphate limitation is controlled by the PHR1 family of transcription factors in Arabidopsis

AC Barragán-Rosillo… - Proceedings of the …, 2021 - National Acad Sciences
As phosphorus is one of the most limiting nutrients in many natural and agricultural
ecosystems, plants have evolved strategies that cope with its scarcity. Genetic approaches …

Sequencing 4.3 million mutations in wheat promoters to understand and modify gene expression

J Zhang, H Xiong, GF Burguener… - Proceedings of the …, 2023 - National Acad Sciences
Wheat is an important contributor to global food security, and further improvements are
required to feed a growing human population. Functional genetics and genomics tools can …

GrainGenes: a data-rich repository for small grains genetics and genomics

E Yao, VC Blake, L Cooper, CP Wight, S Michel… - Database, 2022 - academic.oup.com
As one of the US Department of Agriculture—Agricultural Research Service flagship
databases, GrainGenes (https://wheat. pw. usda. gov) serves the data and community needs …

Wheat speciation and adaptation: perspectives from reticulate evolution

X Zhao, X Fu, C Yin, F Lu - Abiotech, 2021 - Springer
Reticulate evolution through the interchanging of genetic components across organisms can
impact significantly on the fitness and adaptation of species. Bread wheat (Triticum aestivum …

An atlas of wheat epigenetic regulatory elements reveals subgenome divergence in the regulation of development and stress responses

M Wang, Z Li, Y Zhang, Y Zhang, Y Xie, L Ye… - The Plant …, 2021 - academic.oup.com
Wheat (Triticum aestivum) has a large allohexaploid genome. Subgenome-divergent
regulation contributed to genome plasticity and the domestication of polyploid wheat …

Evolutionary rewiring of the wheat transcriptional regulatory network by lineage-specific transposable elements

Y Zhang, Z Li, K Lin, Y Peng, L Ye, Y Zhuang… - Genome …, 2021 - genome.cshlp.org
More than 80% of the wheat genome consists of transposable elements (TEs), which act as
major drivers of wheat genome evolution. However, their contributions to the regulatory …

[HTML][HTML] Centromere repositioning and shifts in wheat evolution

J Zhao, Y Xie, C Kong, Z Lu, H Jia, Z Ma, Y Zhang… - Plant …, 2023 - cell.com
The centromere is the region of a chromosome that directs its separation and plays an
important role in cell division and reproduction of organisms. Elucidating the dynamics of …

[HTML][HTML] Genomic variants affecting homoeologous gene expression dosage contribute to agronomic trait variation in allopolyploid wheat

F He, W Wang, WB Rutter, KW Jordan, J Ren… - Nature …, 2022 - nature.com
Allopolyploidy greatly expands the range of possible regulatory interactions among
functionally redundant homoeologous genes. However, connection between the emerging …