Proteogenomic data and resources for pan-cancer analysis

Y Li, Y Dou, FDV Leprevost, Y Geffen, AP Calinawan… - Cancer cell, 2023 - cell.com
Summary The National Cancer Institute's Clinical Proteomic Tumor Analysis Consortium
(CPTAC) investigates tumors from a proteogenomic perspective, creating rich multi-omics …

Artificial intelligence in cancer target identification and drug discovery

Y You, X Lai, Y Pan, H Zheng, J Vera, S Liu… - … and Targeted Therapy, 2022 - nature.com
Artificial intelligence is an advanced method to identify novel anticancer targets and discover
novel drugs from biology networks because the networks can effectively preserve and …

Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness

Y Li, TSM Lih, SM Dhanasekaran, R Mannan, L Chen… - Cancer Cell, 2023 - cell.com
Clear cell renal cell carcinomas (ccRCCs) represent∼ 75% of RCC cases and account for
most RCC-associated deaths. Inter-and intratumoral heterogeneity (ITH) results in varying …

Multi-omics analysis identifies therapeutic vulnerabilities in triple-negative breast cancer subtypes

BD Lehmann, A Colaprico, TC Silva, J Chen… - Nature …, 2021 - nature.com
Triple-negative breast cancer (TNBC) is a collection of biologically diverse cancers
characterized by distinct transcriptional patterns, biology, and immune composition. TNBCs …

Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma

C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li… - Cancer cell, 2021 - cell.com
We present a proteogenomic study of 108 human papilloma virus (HPV)-negative head and
neck squamous cell carcinomas (HNSCCs). Proteomic analysis systematically catalogs …

Integrated proteogenomic characterization across major histological types of pediatric brain cancer

F Petralia, N Tignor, B Reva, M Koptyra, S Chowdhury… - Cell, 2020 - cell.com
We report a comprehensive proteogenomics analysis, including whole-genome sequencing,
RNA sequencing, and proteomics and phosphoproteomics profiling, of 218 tumors across 7 …

[HTML][HTML] Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy

K Krug, EJ Jaehnig, S Satpathy, L Blumenberg… - Cell, 2020 - cell.com
The integration of mass spectrometry-based proteomics with next-generation DNA and RNA
sequencing profiles tumors more comprehensively. Here this" proteogenomics" approach …

[HTML][HTML] Proteogenomic and metabolomic characterization of human glioblastoma

LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao… - Cancer cell, 2021 - cell.com
Glioblastoma (GBM) is the most aggressive nervous system cancer. Understanding its
molecular pathogenesis is crucial to improving diagnosis and treatment. Integrated analysis …

[HTML][HTML] Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer

S Chowdhury, JJ Kennedy, RG Ivey, OD Murillo… - Cell, 2023 - cell.com
To improve the understanding of chemo-refractory high-grade serous ovarian cancers
(HGSOCs), we characterized the proteogenomic landscape of 242 (refractory and sensitive) …

Dual role of ANGPTL4 in inflammation

Y Zuo, Z He, Y Chen, L Dai - Inflammation Research, 2023 - Springer
Abstract Background: Angiopoietin-like 4 (ANGPTL4) belongs to the angiopoietin-like
protein family and mediates the inhibition of lipoprotein lipase activity. Emerging evidence …