[PDF][PDF] What is a cell type and how to define it?

H Zeng - Cell, 2022 - cell.com
Cell types are the basic functional units of an organism. Cell types exhibit diverse
phenotypic properties at multiple levels, making them challenging to define, categorize, and …

[PDF][PDF] Bioelectric signaling: Reprogrammable circuits underlying embryogenesis, regeneration, and cancer

M Levin - Cell, 2021 - cell.com
How are individual cell behaviors coordinated toward invariant large-scale anatomical
outcomes in development and regeneration despite unpredictable perturbations …

[HTML][HTML] muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data

HL Crowell, C Soneson, PL Germain, D Calini… - Nature …, 2020 - nature.com
Single-cell RNA sequencing (scRNA-seq) has become an empowering technology to profile
the transcriptomes of individual cells on a large scale. Early analyses of differential …

A reference cell tree will serve science better than a reference cell atlas

S Domcke, J Shendure - Cell, 2023 - cell.com
Single-cell biology is facing a crisis of sorts. Vast numbers of single-cell molecular profiles
are being generated, clustered and annotated. However, this is overwhelmingly ad hoc, and …

[PDF][PDF] Single-cell resolution of lineage trajectories in the Arabidopsis stomatal lineage and developing leaf

CB Lopez-Anido, A Vatén, NK Smoot, N Sharma… - Developmental cell, 2021 - cell.com
Dynamic cell identities underlie flexible developmental programs. The stomatal lineage in
the Arabidopsis leaf epidermis features asynchronous and indeterminate divisions that can …

[HTML][HTML] Single-nucleus and in situ RNA–sequencing reveal cell topographies in the human pancreas

L Tosti, Y Hang, O Debnath, S Tiesmeyer, T Trefzer… - Gastroenterology, 2021 - Elsevier
Background and aims Molecular evidence of cellular heterogeneity in the human exocrine
pancreas has not been yet established, due to the local concentration and cascade of …

[PDF][PDF] Single nucleus transcriptome and chromatin accessibility of postmortem human pituitaries reveal diverse stem cell regulatory mechanisms

Z Zhang, M Zamojski, GR Smith, TL Willis, V Yianni… - Cell reports, 2022 - cell.com
Despite their importance in tissue homeostasis and renewal, human pituitary stem cells
(PSCs) are incompletely characterized. We describe a human single nucleus RNA-seq and …

[HTML][HTML] The heterocellular heart: identities, interactions, and implications for cardiology

A Lother, P Kohl - Basic Research in Cardiology, 2023 - Springer
The heterocellular nature of the heart has been receiving increasing attention in recent
years. In addition to cardiomyocytes as the prototypical cell type of the heart, non-myocytes …

A single-cell atlas of the mouse and human prostate reveals heterogeneity and conservation of epithelial progenitors

L Crowley, F Cambuli, L Aparicio, M Shibata… - Elife, 2020 - elifesciences.org
Understanding the cellular constituents of the prostate is essential for identifying the cell of
origin for prostate adenocarcinoma. Here, we describe a comprehensive single-cell atlas of …

[HTML][HTML] Single-cell lineage capture across genomic modalities with CellTag-multi reveals fate-specific gene regulatory changes

K Jindal, MT Adil, N Yamaguchi, X Yang… - Nature …, 2023 - nature.com
Complex gene regulatory mechanisms underlie differentiation and reprogramming.
Contemporary single-cell lineage-tracing (scLT) methods use expressed, heritable DNA …