Deep learning for cellular image analysis

E Moen, D Bannon, T Kudo, W Graf, M Covert… - Nature …, 2019 - nature.com
Recent advances in computer vision and machine learning underpin a collection of
algorithms with an impressive ability to decipher the content of images. These deep learning …

Multiple object tracking: A literature review

W Luo, J Xing, A Milan, X Zhang, W Liu, TK Kim - Artificial intelligence, 2021 - Elsevier
Abstract Multiple Object Tracking (MOT) has gained increasing attention due to its academic
and commercial potential. Although different approaches have been proposed to tackle this …

Tracking the untrackable: Learning to track multiple cues with long-term dependencies

A Sadeghian, A Alahi… - Proceedings of the IEEE …, 2017 - openaccess.thecvf.com
The majority of existing solutions to the Multi-Target Tracking (MTT) problem do not combine
cues over a long period of time in a coherent fashion. In this paper, we present an online …

Methods for cell and particle tracking

E Meijering, O Dzyubachyk, I Smal - Methods in enzymology, 2012 - Elsevier
Achieving complete understanding of any living thing inevitably requires thorough analysis
of both its anatomic and dynamic properties. Live-cell imaging experiments carried out to …

A benchmark for comparison of cell tracking algorithms

M Maška, V Ulman, D Svoboda, P Matula… - …, 2014 - academic.oup.com
Motivation: Automatic tracking of cells in multidimensional time-lapse fluorescence
microscopy is an important task in many biomedical applications. A novel framework for …

Cell segmentation: 50 years down the road [life sciences]

E Meijering - IEEE signal processing magazine, 2012 - ieeexplore.ieee.org
Ever since the establishment of cell theory in the early 19th century, which recognized the
cell as the fundamental building unit of life, biologists have sought to explain the underlying …

[HTML][HTML] Objective comparison of particle tracking methods

N Chenouard, I Smal, F De Chaumont, M Maška… - Nature …, 2014 - nature.com
Particle tracking is of key importance for quantitative analysis of intracellular dynamic
processes from time-lapse microscopy image data. Because manually detecting and …

[PDF][PDF] Histo-cytometry: a method for highly multiplex quantitative tissue imaging analysis applied to dendritic cell subset microanatomy in lymph nodes

MY Gerner, W Kastenmuller, I Ifrim, J Kabat… - Immunity, 2012 - cell.com
Flow cytometry allows highly quantitative analysis of complex dissociated populations at the
cost of neglecting their tissue localization. In contrast, conventional microscopy methods …

An objective comparison of cell-tracking algorithms

V Ulman, M Maška, KEG Magnusson, O Ronneberger… - Nature …, 2017 - nature.com
We present a combined report on the results of three editions of the Cell Tracking
Challenge, an ongoing initiative aimed at promoting the development and objective …

[HTML][HTML] A bird's-eye view of deep learning in bioimage analysis

E Meijering - Computational and structural biotechnology journal, 2020 - Elsevier
Deep learning of artificial neural networks has become the de facto standard approach to
solving data analysis problems in virtually all fields of science and engineering. Also in …