Neural natural language processing for unstructured data in electronic health records: a review

I Li, J Pan, J Goldwasser, N Verma, WP Wong… - Computer Science …, 2022 - Elsevier
Electronic health records (EHRs), digital collections of patient healthcare events and
observations, are ubiquitous in medicine and critical to healthcare delivery, operations, and …

Neural entity linking: A survey of models based on deep learning

Ö Sevgili, A Shelmanov, M Arkhipov… - Semantic …, 2022 - content.iospress.com
This survey presents a comprehensive description of recent neural entity linking (EL)
systems developed since 2015 as a result of the “deep learning revolution” in natural …

Knowledge-graph-enabled biomedical entity linking: a survey

J Shi, Z Yuan, W Guo, C Ma, J Chen, M Zhang - World Wide Web, 2023 - Springer
Abstract Biomedical Entity Linking (BM-EL) task, which aims to match biomedical mentions
in articles to entities in a certain knowledge base (eg, the Unified Medical Language …

Clustering-based inference for biomedical entity linking

R Angell, N Monath, S Mohan, N Yadav… - arXiv preprint arXiv …, 2020 - arxiv.org
Due to large number of entities in biomedical knowledge bases, only a small fraction of
entities have corresponding labelled training data. This necessitates entity linking models …

Bootleg: Chasing the tail with self-supervised named entity disambiguation

L Orr, M Leszczynski, S Arora, S Wu, N Guha… - arXiv preprint arXiv …, 2020 - arxiv.org
A challenge for named entity disambiguation (NED), the task of mapping textual mentions to
entities in a knowledge base, is how to disambiguate entities that appear rarely in the …

医学知识图谱构建关键技术及研究进展

谭玲, 鄂海红, 匡泽民, 宋美娜, 刘毓, 陈正宇… - 大 …, 2021 - infocomm-journal.com
摘要随着互联网技术的不断迭代更新, 对海量数据的语义理解变得越来越重要.
知识图谱是一种揭示实体之间关系的语义网络, 医学是知识图谱应用较广的垂直领域之一 …

Fast and effective biomedical entity linking using a dual encoder

R Bhowmik, K Stratos, G De Melo - arXiv preprint arXiv:2103.05028, 2021 - arxiv.org
Biomedical entity linking is the task of identifying mentions of biomedical concepts in text
documents and mapping them to canonical entities in a target thesaurus. Recent …

Medical concept normalization in clinical trials with drug and disease representation learning

Z Miftahutdinov, A Kadurin, R Kudrin… - …, 2021 - academic.oup.com
Motivation Clinical trials are the essential stage of every drug development program for the
treatment to become available to patients. Despite the importance of well-structured clinical …

Improving zero-shot entity linking candidate generation with ultra-fine entity type information

X Sui, Y Zhang, K Song, B Zhou, G Zhao… - Proceedings of the …, 2022 - aclanthology.org
Entity linking, which aims at aligning ambiguous entity mentions to their referent entities in a
knowledge base, plays a key role in multiple natural language processing tasks. Recently …

[PDF][PDF] Enhancing Entity Representations with Prompt Learning for Biomedical Entity Linking.

T Zhu, Y Qin, Q Chen, B Hu, Y Xiang - IJCAI, 2022 - ijcai.org
Biomedical entity linking aims to map mentions in biomedical text to standardized concepts
or entities in a curated knowledge base (KB) such as Unified Medical Language System …