Assessing microbial diversity in Yellowstone National Park hot springs using a field deployable automated nucleic acid extraction system

JM Wood, C Urbaniak, C Parker, NK Singh… - Frontiers in Ecology …, 2024 - frontiersin.org
Microbial diversity estimation involves extracting nucleic acids from intricate sample
matrices. Preparing nucleic acid samples is time-consuming, necessitating effective cell lysis …

[PDF][PDF] Can long-read sequencing tackle the barriers, which the next-generation could not? A review

N Szakállas, BK Barták, G Valcz, ZB Nagy… - Pathology and …, 2024 - por-journal.com
The complete genetic information of the organisms is stored and transferred in singleand
double-stranded ribonucleic (RNA) and deoxyribonucleic (DNA) acids [1]. The mystery …

Utility of nanopore sequencing for detecting pathogens in bronchoalveolar lavage fluid from pediatric patients with respiratory failure

M Yamaguchi, K Horiba, K Haruta, S Takeuchi… - Journal of Clinical …, 2023 - Elsevier
RNA viruses are the most frequent pathogens responsible for respiratory infections,
particularly in pediatric patients. Next-generation sequencing, represented by Illumina …

纳米孔测序在肿瘤并发感染中的应用.

刘熙, 刘馨, 蔡静静, 杜亚茜… - Journal of Kunming …, 2023 - search.ebscohost.com
目的评估纳米孔测序在肿瘤患者并发感染性疾病中的临床应用价值, 为肿瘤患者感染性疾病的
快速, 灵敏诊断提供新的检测方法. 方法收集2022 年7 月至8 月云南省肿瘤医院36 …

[PDF][PDF] The Transmission of Enteric Viruses through the Aquatic Environment in the UK

S Treagus - 2022 - ore.exeter.ac.uk
Hepatitis E virus (HEV) and norovirus are known enteric pathogens which can cause a wide
range of symptoms. Norovirus is estimated to cause 3 million cases in the UK annually, and …

Harnessing Genomic Surveillance to Characterize the Molecular Epidemiology and Uncover Antiviral Resistance Mechanisms of SARS-CoV-2

TL Hu - 2024 - search.proquest.com
Abstract SARS-CoV-2, the causative agent of COVID-19, has had a devastating impact,
resulting in over 7 million deaths worldwide. Like most viruses, SARS-CoV-2 has continued …

Field deployable automated nucleic acid extraction system enables rapid on-site measurement of microbial diversity of Yellowstone National Park hot springs

JM Wood, C Urbaniak, CW Parker, NK Singh, S Wong… - 2023 - researchsquare.com
Background: Microbial diversity estimation relies heavily on the extraction of nucleic acids
from complex sample matrixes, regardless of the location of the laboratory used to recover …

Gut microbiome profiling of term versus preterm infants using Nanopore MinION and Illumina MiSeq sequencing

T Cha, HH Kim, J Keum, MJ Kwak, JY Park, JK Hoh… - 2022 - researchsquare.com
Background: The impact of prematurity on the gut microbiome has not been extensively
studied. The newer Nanopore MinION sequencing (long-read, Oxford Nanopore …

Identification and characterization of Listeria monocytogenes originating from the salmon processing value chain

IM Duister - 2022 - ntnuopen.ntnu.no
The identification, source tracking and surveillance of foodborne pathogens such as Listeria
monocytogenes (L. monocytogenes) are crucial for the food industry to limit major outbreaks …

[PDF][PDF] Near patient pathogen sequencing

CB de Villiers, L Blackburn, H Carr, J Janus, M Kroese… - 2022 - finddx.org
Pathogen genome sequencing is used in the management of infectious diseases,
supporting diagnosis, treatment decisions, outbreak management, surveillance and …