Deep learning in neural networks: An overview

J Schmidhuber - Neural networks, 2015 - Elsevier
In recent years, deep artificial neural networks (including recurrent ones) have won
numerous contests in pattern recognition and machine learning. This historical survey …

How to study proteins by circular dichroism

SM Kelly, TJ Jess, NC Price - Biochimica et Biophysica Acta (BBA)-Proteins …, 2005 - Elsevier
Circular dichroism (CD) is being increasingly recognised as a valuable technique for
examining the structure of proteins in solution. However, the value of many studies using CD …

DichroWeb, a website for calculating protein secondary structure from circular dichroism spectroscopic data

AJ Miles, SG Ramalli, BA Wallace - Protein Science, 2022 - Wiley Online Library
Circular dichroism (CD) spectroscopy is a widely‐used method for characterizing the
secondary structures of proteins. The well‐established and highly used analysis website …

Using circular dichroism spectra to estimate protein secondary structure

NJ Greenfield - Nature protocols, 2006 - nature.com
Circular dichroism (CD) is an excellent tool for rapid determination of the secondary
structure and folding properties of proteins that have been obtained using recombinant …

Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set

N Sreerama, RW Woody - Analytical biochemistry, 2000 - Elsevier
We have expanded the reference set of proteins used in SELCON3 by including 11
additional proteins (selected from the reference sets of Yang and co-workers and Keiderling …

Protein secondary structure analyses from circular dichroism spectroscopy: methods and reference databases

L Whitmore, BA Wallace - Biopolymers: Original Research on …, 2008 - Wiley Online Library
Circular dichroism (CD) spectroscopy has been a valuable method for the analysis of protein
secondary structures for many years. With the advent of synchrotron radiation circular …

DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data

L Whitmore, BA Wallace - Nucleic acids research, 2004 - academic.oup.com
The DICHROWEB web server enables on-line analyses of circular dichroism (CD)
spectroscopic data, providing calculated secondary structure content and graphical …

Stabilization of α-synuclein secondary structure upon binding to synthetic membranes

WS Davidson, A Jonas, DF Clayton… - Journal of Biological …, 1998 - ASBMB
α-Synuclein is a highly conserved presynaptic protein of unknown function. A mutation in the
protein has been causally linked to Parkinson's disease in humans, and the normal protein …

Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes

PN Dodds, GJ Lawrence… - Proceedings of the …, 2006 - National Acad Sciences
Plant resistance proteins (R proteins) recognize corresponding pathogen avirulence (Avr)
proteins either indirectly through detection of changes in their host protein targets or through …

Raman spectroscopic characterization of secondary structure in natively unfolded proteins: α-synuclein

NC Maiti, MM Apetri, MG Zagorski… - Journal of the …, 2004 - ACS Publications
The application of Raman spectroscopy to characterize natively unfolded proteins has been
underdeveloped, even though it has significant technical advantages. We propose that a …