Recent advances in high-throughput single-cell transcriptomics and spatial transcriptomics

X Shen, Y Zhao, Z Wang, Q Shi - Lab on a Chip, 2022 - pubs.rsc.org
Single-cell RNA sequencing (scRNA-seq) has been developed for characterizing the
transcriptome of cells that are rare but of biological significance. With cell barcoding and …

Tools for the analysis of high-dimensional single-cell RNA sequencing data

Y Wu, K Zhang - Nature Reviews Nephrology, 2020 - nature.com
Breakthroughs in the development of high-throughput technologies for profiling
transcriptomes at the single-cell level have helped biologists to understand the …

A single-nucleus transcriptomic atlas of primate liver aging uncovers the pro-senescence role of SREBP2 in hepatocytes

S Yang, C Liu, M Jiang, X Liu, L Geng, Y Zhang… - Protein & …, 2024 - academic.oup.com
Aging increases the risk of liver diseases and systemic susceptibility to aging-related
diseases. However, cell type-specific changes and the underlying mechanism of liver aging …

Brown adipose tissue development and metabolism

SM Jung, J Sanchez-Gurmaches, DA Guertin - Brown adipose tissue, 2019 - Springer
Brown adipose tissue is well known to be a thermoregulatory organ particularly important in
small rodents and human infants, but it was only recently that its existence and significance …

Single-cell RNA-seq reveals the genesis and heterogeneity of tumor microenvironment in pancreatic undifferentiated carcinoma with osteoclast-like giant-cells

X Wang, J Miao, S Wang, R Shen, S Zhang, Y Tian… - Molecular Cancer, 2022 - Springer
Background Undifferentiated carcinoma with osteoclast-like giant cells (OGCs) of pancreas
(UCOGCP) is a rare subtype of pancreatic ductal adenocarcinoma (PDAC), which had …

Single-cell RNA sequencing in cancer: Applications, advances, and emerging challenges

G Sun, Z Li, D Rong, H Zhang, X Shi, W Yang… - Molecular Therapy …, 2021 - cell.com
Cancer has become one of the greatest threats to human health, and new technologies are
urgently needed to further clarify the mechanisms of cancer so that better detection and …

Multicellular immune dynamics implicate PIM1 as a potential therapeutic target for uveitis

H Li, L Xie, L Zhu, Z Li, R Wang, X Liu, Z Huang… - Nature …, 2022 - nature.com
Uveitis is a severe autoimmune disease, and a common cause of blindness; however, its
individual cellular dynamics and pathogenic mechanism remain poorly understood. Herein …

Opportunities and challenges in the application of single-cell and spatial transcriptomics in plants

C Chen, Y Ge, L Lu - Frontiers in Plant Science, 2023 - frontiersin.org
Single-cell and spatial transcriptomics have diverted researchers' attention from the
multicellular level to the single-cell level and spatial information. Single-cell transcriptomes …

Single-cell transcriptomics reveals novel role of microglia in fibrovascular membrane of proliferative diabetic retinopathy

Z Hu, X Mao, M Chen, X Wu, T Zhu, Y Liu, Z Zhang… - Diabetes, 2022 - Am Diabetes Assoc
Vitreous fibrovascular membranes (FVMs), the hallmark of proliferative diabetic retinopathy
(PDR), cause retinal hemorrhage, detachment, and eventually blindness. However, little is …

Mapping the developing human cardiac endothelium at single-cell resolution identifies MECOM as a regulator of arteriovenous gene expression

IR McCracken, R Dobie, M Bennett… - Cardiovascular …, 2022 - academic.oup.com
Aims Coronary vasculature formation is a critical event during cardiac development,
essential for heart function throughout perinatal and adult life. However, current …