Histone modifications for human epigenome analysis

H Kimura - Journal of human genetics, 2013 - nature.com
Histones function both positively and negatively in the regulation of gene expression, mainly
governed by post-translational modifications on specific amino acid residues. Although …

G-quadruplex structures mark human regulatory chromatin

R Hänsel-Hertsch, D Beraldi, SV Lensing, G Marsico… - Nature …, 2016 - nature.com
Abstract G-quadruplex (G4) structural motifs have been linked to transcription 1, 2,
replication 3 and genome instability 4, 5 and are implicated in cancer and other diseases 6 …

[PDF][PDF] Steroid receptors reprogram FoxA1 occupancy through dynamic chromatin transitions

EE Swinstead, TB Miranda, V Paakinaho, S Baek… - Cell, 2016 - cell.com
The estrogen receptor (ER), glucocorticoid receptor (GR), and forkhead box protein 1
(FoxA1) are significant factors in breast cancer progression. FoxA1 has been implicated in …

[PDF][PDF] Pioneer factor NeuroD1 rearranges transcriptional and epigenetic profiles to execute microglia-neuron conversion

T Matsuda, T Irie, S Katsurabayashi, Y Hayashi… - Neuron, 2019 - cell.com
Minimal sets of transcription factors can directly reprogram somatic cells into neurons.
However, epigenetic remodeling during neuronal reprogramming has not been well …

[PDF][PDF] Autophagy regulation of metabolism is required for CD8+ T cell anti-tumor immunity

L DeVorkin, N Pavey, G Carleton, A Comber, C Ho… - Cell reports, 2019 - cell.com
Autophagy is a cell survival process essential for the regulation of immune responses to
infections. However, the role of T cell autophagy in anti-tumor immunity is less clear. Here …

Redistribution of the Lamin B1 genomic binding profile affects rearrangement of heterochromatic domains and SAHF formation during senescence

M Sadaie, R Salama, T Carroll… - Genes & …, 2013 - genesdev.cshlp.org
Senescence is a stress-responsive form of stable cell cycle exit. Senescent cells have a
distinct gene expression profile, which is often accompanied by the spatial redistribution of …

H3K27me and PRC2 transmit a memory of repression across generations and during development

LJ Gaydos, W Wang, S Strome - Science, 2014 - science.org
For proper development, cells must retain patterns of gene expression and repression
through cell division. Repression via methylation of histone H3 on Lys27 (H3K27me) by …

An assessment of histone-modification antibody quality

TA Egelhofer, A Minoda, S Klugman, K Lee… - Nature structural & …, 2011 - nature.com
We have tested the specificity and utility of more than 200 antibodies raised against 57
different histone modifications in Drosophila melanogaster, Caenorhabditis elegans and …

Histone H3K9 methylation is dispensable for Caenorhabditis elegans development but suppresses RNA:DNA hybrid-associated repeat instability

P Zeller, J Padeken, R van Schendel, V Kalck… - Nature …, 2016 - nature.com
Abstract Histone H3 lysine 9 (H3K9) methylation is a conserved modification that generally
represses transcription. In Caenorhabditis elegans it is enriched on silent tissue-specific …

Rapid turnover of long noncoding RNAs and the evolution of gene expression

C Kutter, S Watt, K Stefflova, MD Wilson… - PLoS …, 2012 - journals.plos.org
A large proportion of functional sequence within mammalian genomes falls outside protein-
coding exons and can be transcribed into long RNAs. However, the roles in mammalian …