Computational methods for the analysis and prediction of egfr-mutated lung cancer drug resistance: Recent advances in drug design, challenges and future prospects

R Qureshi, B Zou, T Alam, J Wu… - … /ACM Transactions on …, 2022 - ieeexplore.ieee.org
Lung cancer is a major cause of cancer deaths worldwide, and has a very low survival rate.
Non-small cell lung cancer (NSCLC) is the largest subset of lung cancers, which accounts …

[HTML][HTML] Machine learning based personalized drug response prediction for lung cancer patients

R Qureshi, SA Basit, JA Shamsi, X Fan, M Nawaz… - Scientific Reports, 2022 - nature.com
Lung cancers with a mutated epidermal growth factor receptor (EGFR) are a major
contributor to cancer fatalities globally. Targeted tyrosine kinase inhibitors (TKIs) have been …

Modeling the effect of pathogenic mutations on the conformational landscape of protein kinases

G Saladino, FL Gervasio - Current opinion in structural biology, 2016 - Elsevier
Highlights•Non-synonymous point mutations affect the conformational landscape of
proteins.•Free energy calculations are used to quantify the effect of mutations.•Pathogenic …

Binding mechanism of kinase inhibitors to EGFR and T790M, L858R and L858R/T790M mutants through structural and energetic analysis

M Bello - International journal of biological macromolecules, 2018 - Elsevier
Experimental studies have demonstrated that L858R mutation in the EGF receptor (EGFR)
confers tumor sensitivity whereas T790M and L858R/T790M mutations cause resistance to …

Structural insight into the binding mechanism of ATP to EGFR and L858R, and T790M and L858R/T790 mutants

L Saldaña-Rivera, M Bello… - Journal of Biomolecular …, 2019 - Taylor & Francis
The L858R mutation in EGFR is particularly responsive to small tyrosine kinase inhibitors
(TKIs) such as gefitinib and erlotinib. This efficacy decreases due to drug resistance …

[HTML][HTML] Exploring molecular mechanisms of paradoxical activation in the BRAF kinase dimers: atomistic simulations of conformational dynamics and modeling of …

A Tse, GM Verkhivker - PloS one, 2016 - journals.plos.org
The recent studies have revealed that most BRAF inhibitors can paradoxically induce kinase
activation by promoting dimerization and enzyme transactivation. Despite rapidly growing …

[HTML][HTML] Hotspot mutations in KIT receptor differentially modulate its allosterically coupled conformational dynamics: impact on activation and drug sensitivity

I Chauvot de Beauchêne, A Allain… - PLoS computational …, 2014 - journals.plos.org
Receptor tyrosine kinase KIT controls many signal transduction pathways and represents a
typical allosterically regulated protein. The mutation-induced deregulation of KIT activity …

[HTML][HTML] Structure-based network analysis of activation mechanisms in the ErbB family of receptor tyrosine kinases: the regulatory spine residues are global mediators …

KA James, GM Verkhivker - PLoS One, 2014 - journals.plos.org
The ErbB protein tyrosine kinases are among the most important cell signaling families and
mutation-induced modulation of their activity is associated with diverse functions in …

The molecular mechanism behind resistance of the kinase FLT3 to the inhibitor quizartinib

R Friedman - Proteins: Structure, Function, and Bioinformatics, 2017 - Wiley Online Library
Fms‐like tyrosine kinase 3 (FLT3) is a receptor tyrosine kinase that is a drug target for
leukemias. Several potent inhibitors of FLT3 exist, and bind to the inactive form of the …

[HTML][HTML] Differential protein stability of EGFR mutants determines responsiveness to tyrosine kinase inhibitors

P Ray, YS Tan, V Somnay, R Mehta, M Sitto, A Ahsan… - Oncotarget, 2016 - ncbi.nlm.nih.gov
Non-small cell lung cancer (NSCLC) patients carrying specific EGFR kinase activating
mutations (L858R, delE746-A750) respond well to tyrosine kinase inhibitors (TKIs) …