[HTML][HTML] Super-enhancers in the control of cell identity and disease

D Hnisz, BJ Abraham, TI Lee, A Lau, V Saint-André… - Cell, 2013 - cell.com
Super-enhancers are large clusters of transcriptional enhancers that drive expression of
genes that define cell identity. Improved understanding of the roles that super-enhancers …

[PDF][PDF] Risk SNP-mediated promoter-enhancer switching drives prostate cancer through lncRNA PCAT19

JT Hua, M Ahmed, H Guo, Y Zhang, S Chen, F Soares… - Cell, 2018 - cell.com
The prostate cancer (PCa) risk-associated SNP rs11672691 is positively associated with
aggressive disease at diagnosis. We showed that rs11672691 maps to the promoter of a …

[HTML][HTML] CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes

LA Gilbert, MH Larson, L Morsut, Z Liu, GA Brar… - Cell, 2013 - cell.com
The genetic interrogation and reprogramming of cells requires methods for robust and
precise targeting of genes for expression or repression. The CRISPR-associated …

An atlas of dynamic chromatin landscapes in mouse fetal development

DU Gorkin, I Barozzi, Y Zhao, Y Zhang, H Huang… - Nature, 2020 - nature.com
Abstract The Encyclopedia of DNA Elements (ENCODE) project has established a genomic
resource for mammalian development, profiling a diverse panel of mouse tissues at 8 …

Transcriptional enhancers: from properties to genome-wide predictions

D Shlyueva, G Stampfel, A Stark - Nature Reviews Genetics, 2014 - nature.com
Cellular development, morphology and function are governed by precise patterns of gene
expression. These are established by the coordinated action of genomic regulatory …

Cyclic decidualization of the human endometrium in reproductive health and failure

B Gellersen, JJ Brosens - Endocrine reviews, 2014 - academic.oup.com
Decidualization denotes the transformation of endometrial stromal fibroblasts into
specialized secretory decidual cells that provide a nutritive and immunoprivileged matrix …

[PDF][PDF] Epigenomic signatures of neuronal diversity in the mammalian brain

A Mo, EA Mukamel, FP Davis, C Luo, GL Henry… - Neuron, 2015 - cell.com
Neuronal diversity is essential for mammalian brain function but poses a challenge to
molecular profiling. To address the need for tools that facilitate cell-type-specific epigenomic …

[HTML][HTML] Master transcription factors and mediator establish super-enhancers at key cell identity genes

WA Whyte, DA Orlando, D Hnisz, BJ Abraham, CY Lin… - Cell, 2013 - cell.com
Summary Master transcription factors Oct4, Sox2, and Nanog bind enhancer elements and
recruit Mediator to activate much of the gene expression program of pluripotent embryonic …

Identifying gene targets for brain-related traits using transcriptomic and methylomic data from blood

T Qi, Y Wu, J Zeng, F Zhang, A Xue, L Jiang… - Nature …, 2018 - nature.com
Understanding the difference in genetic regulation of gene expression between brain and
blood is important for discovering genes for brain-related traits and disorders. Here, we …

What are super-enhancers?

S Pott, JD Lieb - Nature genetics, 2015 - nature.com
The term'super-enhancer'has been used to describe groups of putative enhancers in close
genomic proximity with unusually high levels of Mediator binding, as measured by chromatin …