Molecular quantitative trait loci

F Aguet, K Alasoo, YI Li, A Battle, HK Im… - Nature Reviews …, 2023 - nature.com
Understanding functional effects of genetic variants is one of the key challenges in human
genetics, as much of disease-associated variation is located in non-coding regions with …

Multi-omics revolution to promote plant breeding efficiency

U Mahmood, X Li, Y Fan, W Chang, Y Niu, J Li… - Frontiers in Plant …, 2022 - frontiersin.org
Crop production is the primary goal of agricultural activities, which is always taken into
consideration. However, global agricultural systems are coming under increasing pressure …

DNA methylation QTL mapping across diverse human tissues provides molecular links between genetic variation and complex traits

M Oliva, K Demanelis, Y Lu, M Chernoff, F Jasmine… - Nature …, 2023 - nature.com
Studies of DNA methylation (DNAm) in solid human tissues are relatively scarce; tissue-
specific characterization of DNAm is needed to understand its role in gene regulation and its …

Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species

J Klughammer, D Romanovskaia, A Nemc… - Nature …, 2023 - nature.com
Methylation of cytosines is a prototypic epigenetic modification of the DNA. It has been
implicated in various regulatory mechanisms across the animal kingdom and particularly in …

Interaction molecular QTL mapping discovers cellular and environmental modifiers of genetic regulatory effects

S Kasela, F Aguet, S Kim-Hellmuth, BC Brown… - The American Journal of …, 2024 - cell.com
Bulk-tissue molecular quantitative trait loci (QTLs) have been the starting point for
interpreting disease-associated variants, and context-specific QTLs show particular …

Analysis of blood methylation quantitative trait loci in East Asians reveals ancestry-specific impacts on complex traits

Q Peng, X Liu, W Li, H Jing, J Li, X Gao, Q Luo… - Nature Genetics, 2024 - nature.com
Methylation quantitative trait loci (mQTLs) are essential for understanding the role of DNA
methylation changes in genetic predisposition, yet they have not been fully characterized in …

Cell-type heterogeneity: Why we should adjust for it in epigenome and biomarker studies

L Qi, AE Teschendorff - Clinical Epigenetics, 2022 - Springer
Most studies aiming to identify epigenetic biomarkers do so from complex tissues that are
composed of many different cell-types. By definition, these cell-types vary substantially in …

Low-input and single-cell methods for Infinium DNA methylation BeadChips

SM Lee, CE Loo, RD Prasasya… - Nucleic Acids …, 2024 - academic.oup.com
Abstract The Infinium BeadChip is the most widely used DNA methylome assay technology
for population-scale epigenome profiling. However, the standard workflow requires over 200 …

The Biology of Stress Intolerance in Patients with Chronic Pain—State of the Art and Future Directions

A Wyns, J Hendrix, A Lahousse, E De Bruyne… - Journal of clinical …, 2023 - mdpi.com
Stress has been consistently linked to negative impacts on physical and mental health. More
specifically, patients with chronic pain experience stress intolerance, which is an …

The immune factors driving DNA methylation variation in human blood

J Bergstedt, SAK Azzou, K Tsuo, A Jaquaniello… - Nature …, 2022 - nature.com
Epigenetic changes are required for normal development, yet the nature and respective
contribution of factors that drive epigenetic variation in humans remain to be fully …