Stepwise pathogenic evolution of Mycobacterium abscessus

JM Bryant, KP Brown, S Burbaud, I Everall… - Science, 2021 - science.org
INTRODUCTION Nearly all mycobacterial species are free-living environmental
saprophytes. A few, such as Mycobacterium tuberculosis, have evolved to cause …

[HTML][HTML] MDR M. tuberculosis outbreak clone in Eswatini missed by Xpert has elevated bedaquiline resistance dated to the pre-treatment era

P Beckert, E Sanchez-Padilla, M Merker, V Dreyer… - Genome Medicine, 2020 - Springer
Abstract Background Multidrug-resistant (MDR) Mycobacterium tuberculosis complex strains
not detected by commercial molecular drug susceptibility testing (mDST) assays due to the …

[HTML][HTML] Genomic signatures of pre-resistance in Mycobacterium tuberculosis

A Torres Ortiz, J Coronel, JR Vidal, C Bonilla… - Nature …, 2021 - nature.com
Recent advances in bacterial whole-genome sequencing have resulted in a comprehensive
catalog of antibiotic resistance genomic signatures in Mycobacterium tuberculosis. With a …

[HTML][HTML] Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture

C Nimmo, LP Shaw, R Doyle, R Williams, K Brien… - BMC genomics, 2019 - Springer
Background Repeated culture reduces within-sample Mycobacterium tuberculosis genetic
diversity due to selection of clones suited to growth in culture and/or random loss of …

HomoplasyFinder: a simple tool to identify homoplasies on a phylogeny

J Crispell, D Balaz, SV Gordon - Microbial genomics, 2019 - microbiologyresearch.org
A homoplasy is a nucleotide identity resulting from a process other than inheritance from a
common ancestor. Importantly, by distorting the ancestral relationships between nucleotide …

[HTML][HTML] Population structure and genetic diversity of Mycobacterium tuberculosis in Ecuador

D Garzon-Chavez, MA Garcia-Bereguiain… - Scientific Reports, 2020 - nature.com
Tuberculosis (TB) is a significant public health problem in Ecuador with an incidence of 43
per 100,000 inhabitants and an estimated multidrug-resistant-TB prevalence in all TB cases …

[HTML][HTML] The recent rapid expansion of multidrug resistant Ural lineage Mycobacterium tuberculosis in Moldova

MH Chitwood, C Colijn, C Yang, V Crudu… - Nature …, 2024 - nature.com
The projected trajectory of multidrug resistant tuberculosis (MDR-TB) epidemics depends on
the reproductive fitness of circulating strains of MDR M. tuberculosis (Mtb). Previous efforts to …

[HTML][HTML] Whole genome analysis of extensively drug resistant Mycobacterium tuberculosis strains in Peru

D Santos-Lazaro, RG Gavilan, L Solari, AN Vigo… - Scientific Reports, 2021 - nature.com
Peru has the highest burden of multidrug-resistant tuberculosis in the Americas region.
Since 1999, the annual number of extensively drug-resistant tuberculosis (XDR-TB) …

[HTML][HTML] Homoplastic single nucleotide polymorphisms contributed to phenotypic diversity in Mycobacterium tuberculosis

P Tantivitayakul, W Ruangchai, T Juthayothin… - Scientific reports, 2020 - nature.com
Homoplastic mutations are mutations independently occurring in different clades of an
organism. The homoplastic changes may be a result of convergence evolution due to …

Distribution and origins of Mycobacterium tuberculosis L4 in Southeast Asia

PM Ashton, J Cha, C Anscombe… - Microbial …, 2023 - microbiologyresearch.org
Molecular and genomic studies have revealed that Mycobacterium tuberculosis Lineage 4
(L4, Euro-American lineage) emerged in Europe before becoming distributed around the …