Challenges in measuring and understanding biological noise

N Eling, MD Morgan, JC Marioni - Nature Reviews Genetics, 2019 - nature.com
Biochemical reactions are intrinsically stochastic, leading to variation in the production of
mRNAs and proteins within cells. In the scientific literature, this source of variation is typically …

[HTML][HTML] Signalling dynamics, cell decisions, and homeostatic control in health and disease

PO Valls, A Esposito - Current Opinion in Cell Biology, 2022 - Elsevier
Cell signalling engenders cells with the capability to receive and process information from
the intracellular and extracellular environments, trigger and execute biological responses …

Information theory: new look at oncogenic signaling pathways

KA Zielińska, VL Katanaev - Trends in cell biology, 2019 - cell.com
Sustained pro-proliferative signaling is one of the hallmarks of cancer. Although it is
generally understood that the oncogenic signaling pathways are overactivated, or at least …

Short-term cellular memory tunes the signaling responses of the chemokine receptor CXCR4

PC Spinosa, BA Humphries, D Lewin Mejia… - Science …, 2019 - science.org
The chemokine receptor CXCR4 regulates fundamental processes in development, normal
physiology, and diseases, including cancer. Small subpopulations of CXCR4-positive cells …

Out-of-equilibrium gene expression fluctuations in the presence of extrinsic noise

M Biondo, A Singh, M Caselle, M Osella - Physical biology, 2023 - iopscience.iop.org
Cell-to-cell variability in protein concentrations is strongly affected by extrinsic noise,
especially for highly expressed genes. Extrinsic noise can be due to fluctuations of several …

Computational modeling implicates protein scaffolding in p38 regulation of Akt

PC Kinnunen, GD Luker, KE Luker… - Journal of theoretical …, 2022 - Elsevier
Cells process environmental cues by activating intracellular signaling pathways with
numerous interconnections and opportunities for cross-regulation. We employed a systems …

Cell-to-cell variability in JAK2/STAT5 pathway components and cytoplasmic volumes defines survival threshold in erythroid progenitor cells

L Adlung, P Stapor, C Tönsing, L Schmiester… - Cell reports, 2021 - cell.com
Survival or apoptosis is a binary decision in individual cells. However, at the cell-population
level, a graded increase in survival of colony-forming unit-erythroid (CFU-E) cells is …

Predictive model identifies strategies to enhance TSP1-mediated apoptosis signaling

Q Wu, SD Finley - Cell Communication and Signaling, 2017 - Springer
Abstract Background Thrombospondin-1 (TSP1) is a matricellular protein that functions to
inhibit angiogenesis. An important pathway that contributes to this inhibitory effect is …

Computational methods for characterizing and learning from heterogeneous cell signaling data

PC Kinnunen, KE Luker, GD Luker… - Current opinion in systems …, 2021 - Elsevier
Heterogeneity in cell signaling pathways is increasingly appreciated as a fundamental
feature of cell biology and a driver of clinically relevant disease phenotypes. Understanding …

Transcription factor fluctuations underlie cell-to-cell variability in a signaling pathway response

A Ramu, BA Cohen - Genetics, 2023 - academic.oup.com
Stochastic differences among clonal cells can initiate cell fate decisions in development or
cause cell-to-cell differences in the responses to drugs or extracellular ligands. One …