The role of 3D genome organization in development and cell differentiation

H Zheng, W Xie - Nature reviews Molecular cell biology, 2019 - nature.com
In eukaryotes, the genome does not exist as a linear molecule but instead is hierarchically
packaged inside the nucleus. This complex genome organization includes multiscale …

The interplay of epigenetic marks during stem cell differentiation and development

Y Atlasi, HG Stunnenberg - Nature Reviews Genetics, 2017 - nature.com
Chromatin, the template for epigenetic regulation, is a highly dynamic entity that is constantly
reshaped during early development and differentiation. Epigenetic modification of chromatin …

Ultrasensitive Ribo-seq reveals translational landscapes during mammalian oocyte-to-embryo transition and pre-implantation development

Z Xiong, K Xu, Z Lin, F Kong, Q Wang, Y Quan… - Nature Cell …, 2022 - nature.com
In mammals, translational control plays critical roles during oocyte-to-embryo transition
(OET) when transcription ceases. However, the underlying regulatory mechanisms remain …

In situ genome sequencing resolves DNA sequence and structure in intact biological samples

AC Payne, ZD Chiang, PL Reginato, SM Mangiameli… - Science, 2021 - science.org
INTRODUCTION Genomes are spatially organized across length scales from single base
pairs to whole chromosomes. This organization is thought to regulate gene expression and …

[PDF][PDF] 8C-like cells capture the human zygotic genome activation program in vitro

J Taubenschmid-Stowers, M Rostovskaya, F Santos… - Cell stem cell, 2022 - cell.com
The activation of the embryonic genome marks the first major wave of transcription in the
developing organism. Zygotic genome activation (ZGA) in mouse 2-cell embryos and 8-cell …

Profiling and functional characterization of maternal mRNA translation during mouse maternal-to-zygotic transition

C Zhang, M Wang, Y Li, Y Zhang - Science advances, 2022 - science.org
Translational regulation plays an important role in gene expression and function. Although
the transcriptional dynamics of mouse preimplantation embryos have been well …

A male-expressed rice embryogenic trigger redirected for asexual propagation through seeds

I Khanday, D Skinner, B Yang, R Mercier… - Nature, 2019 - nature.com
The molecular pathways that trigger the initiation of embryogenesis after fertilization in
flowering plants, and prevent its occurrence without fertilization, are not well understood …

Translatome and transcriptome co-profiling reveals a role of TPRXs in human zygotic genome activation

Z Zou, C Zhang, Q Wang, Z Hou, Z Xiong, F Kong… - Science, 2022 - science.org
Translational regulation plays a critical role during the oocyte-to-embryo transition (OET)
and zygotic genome activation (ZGA). Here, we integrated ultra-low-input ribosome profiling …

Dynamics of the epigenetic landscape during the maternal-to-zygotic transition

MA Eckersley-Maslin, C Alda-Catalinas… - … Reviews Molecular Cell …, 2018 - nature.com
A remarkable epigenetic remodelling process occurs shortly after fertilization, which restores
totipotency to the zygote. This involves global DNA demethylation, chromatin remodelling …

CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo

MA Moreno-Mateos, CE Vejnar, JD Beaudoin… - Nature …, 2015 - nature.com
CRISPR-Cas9 technology provides a powerful system for genome engineering. However,
variable activity across different single guide RNAs (sgRNAs) remains a significant …