Advances in omics and bioinformatics tools for systems analyses of plant functions

K Mochida, K Shinozaki - Plant and Cell Physiology, 2011 - academic.oup.com
Omics and bioinformatics are essential to understanding the molecular systems that underlie
various plant functions. Recent game-changing sequencing technologies have revitalized …

Plant proteomics update (2007–2008): second-generation proteomic techniques, an appropriate experimental design, and data analysis to fulfill MIAPE standards …

JV Jorrín-Novo, AM Maldonado… - Journal of …, 2009 - Elsevier
This review is the continuation of three previously published articles [Jorrin JV, Maldonado
AM, Castillejo MA. Plant proteome analysis: a 2006 update. Proteomics 2007; 7: 2947 …

Gene regulation by MAP kinase cascades

BK Fiil, K Petersen, M Petersen, J Mundy - Current opinion in plant biology, 2009 - Elsevier
Mitogen-activated protein kinase (MAPK) cascades are signaling modules that transduce
extracellular stimuli to a range of cellular responses. Research in yeast and metazoans has …

Network analysis of Arabidopsis mitochondrial dynamics reveals a resolved tradeoff between physical distribution and social connectivity

JM Chustecki, DJ Gibbs, GW Bassel, IG Johnston - Cell systems, 2021 - cell.com
Mitochondria in plant cells exist largely as individual organelles which move, colocalize, and
interact, but the cellular priorities addressed by these dynamics remain incompletely …

Re‐evaluation of physical interaction between plant peroxisomes and other organelles using live‐cell imaging techniques

K Oikawa, M Hayashi, Y Hayashi… - Journal of integrative …, 2019 - Wiley Online Library
The dynamic behavior of organelles is essential for plant survival under various
environmental conditions. Plant organelles, with various functions, migrate along actin …

Abiotic stress responses in plants: metabolism to productivity

AF Macedo - Abiotic stress responses in plants: Metabolism …, 2012 - Springer
Plants are sessile beings, so the lack of mechanisms to escape from adverse conditions has
fostered, through evolution, the development of unique and sophisticated responses to …

mEosFP-based green-to-red photoconvertible subcellular probes for plants

J Mathur, R Radhamony, AM Sinclair… - Plant …, 2010 - academic.oup.com
Photoconvertible fluorescent proteins (FPs) are recent additions to the biologists' toolbox for
understanding the living cell. Like green fluorescent protein (GFP), monomeric EosFP is …

Development of a Series of Gateway Binary Vectors Possessing a Tunicamycin Resistance Gene as a Marker for the Transformation of Arabidopsis thaliana

Y Tanaka, S Nakamura, M Kawamukai… - Bioscience …, 2011 - academic.oup.com
We made two series of Gateway binary vectors, pGWBs and R4pGWBs, possessing a UDP-
N-acetylglucosamine: dolichol phosphate N-acetylglucosamine-1-P transferase (GPT) gene …

Metabolic studies in plant organs: don't forget dilution by growth

M Génard, V Baldazzi, Y Gibon - Frontiers in plant science, 2014 - frontiersin.org
The recent development of high-density technologies has enabled a dramatic extension of
the exploration of living organisms. Such exploration typically consists in the parallel …

OGDA: A comprehensive organelle genome database for algae

T Liu, Y Cui, X Jia, J Zhang, R Li, Y Yu, S Jia, J Qu… - Database, 2020 - academic.oup.com
Algae are the oldest taxa on Earth, with an evolutionary relationship that spans prokaryotes
(Cyanobacteria) and eukaryotes. A long evolutionary history has led to high algal diversity …