Methods and applications for single-cell and spatial multi-omics

K Vandereyken, A Sifrim, B Thienpont… - Nature Reviews Genetics, 2023 - nature.com
The joint analysis of the genome, epigenome, transcriptome, proteome and/or metabolome
from single cells is transforming our understanding of cell biology in health and disease. In …

Into the multiverse: advances in single-cell multiomic profiling

S Ogbeide, F Giannese, L Mincarelli, IC Macaulay - Trends in Genetics, 2022 - cell.com
Single-cell transcriptomic approaches have revolutionised the study of complex biological
systems, with the routine measurement of gene expression in thousands of cells enabling …

Mechanism of spindle pole organization and instability in human oocytes

C So, K Menelaou, J Uraji, K Harasimov, AM Steyer… - Science, 2022 - science.org
Human oocytes are prone to assembling meiotic spindles with unstable poles, which can
favor aneuploidy in human eggs. The underlying causes of spindle instability are unknown …

Dynamics of DNA hydroxymethylation and methylation during mouse embryonic and germline development

R Yan, X Cheng, C Gu, Y Xu, X Long, J Zhai, F Sun… - Nature Genetics, 2023 - nature.com
Abstract In mammals, DNA 5-hydroxymethylcytosine (5hmC) is involved in methylation
reprogramming during early embryonic development. Yet, to what extent 5hmC participates …

[HTML][HTML] Single cell cancer epigenetics

M Casado-Pelaez, A Bueno-Costa, M Esteller - Trends in Cancer, 2022 - cell.com
Bulk sequencing methodologies have allowed us to make great progress in cancer
research. Unfortunately, these techniques lack the resolution to fully unravel the epigenetic …

Single-cell technologies: From research to application

L Wen, G Li, T Huang, W Geng, H Pei, J Yang, M Zhu… - The Innovation, 2022 - cell.com
In recent years, more and more single-cell technologies have been developed. A vast
amount of single-cell omics data has been generated by large projects, such as the Human …

Single-cell multi-omics sequencing of human spermatogenesis reveals a DNA demethylation event associated with male meiotic recombination

Y Huang, L Li, G An, X Yang, M Cui, X Song, J Lin… - Nature Cell …, 2023 - nature.com
Human spermatogenesis is a highly ordered process; however, the roles of DNA
methylation and chromatin accessibility in this process remain largely unknown. Here by …

Neurulation of the cynomolgus monkey embryo achieved from 3D blastocyst culture

J Zhai, Y Xu, H Wan, R Yan, J Guo, R Skory, L Yan… - Cell, 2023 - cell.com
Neural tube (NT) defects arise from abnormal neurulation and result in the most common
birth defects worldwide. Yet, mechanisms of primate neurulation remain largely unknown …

Agrocybe cylindracea fucoglucogalactan induced lysosome-mediated apoptosis of colorectal cancer cell through H3K27ac-regulated cathepsin D

Z Wang, K Chen, K Zhang, K He, D Zhang, X Guo… - Carbohydrate …, 2023 - Elsevier
Inducing lysosomal dysfunction is emerging as a promising means for cancer therapy.
Agrocybe cylindracea fucoglucogalactan (ACP) is a bioactive ingredient with anti-tumor …

Neutrophils restrain sepsis associated coagulopathy via extracellular vesicles carrying superoxide dismutase 2 in a murine model of lipopolysaccharide induced …

W Bao, H Xing, S Cao, X Long, H Liu, J Ma… - Nature …, 2022 - nature.com
Disseminated intravascular coagulation (DIC) is a complication of sepsis currently lacking
effective therapeutic options. Excessive inflammatory responses are emerging triggers of …