Bioinformatics challenges for genome-wide association studies

JH Moore, FW Asselbergs, SM Williams - Bioinformatics, 2010 - academic.oup.com
Motivation: The sequencing of the human genome has made it possible to identify an
informative set of> 1 million single nucleotide polymorphisms (SNPs) across the genome …

Host genetic susceptibility to pneumococcal and meningococcal disease: a systematic review and meta-analysis

MC Brouwer, J de Gans, SGB Heckenberg… - The Lancet infectious …, 2009 - thelancet.com
Streptococcus pneumoniae and Neisseria meningitidis can cause sepsis and meningitis.
Several risk factors for pneumococcal and meningococcal disease have been identified, but …

Quality control and quality assurance in genotypic data for genome‐wide association studies

CC Laurie, KF Doheny, DB Mirel, EW Pugh… - Genetic …, 2010 - Wiley Online Library
Genome‐wide scans of nucleotide variation in human subjects are providing an increasing
number of replicated associations with complex disease traits. Most of the variants detected …

A Statistical Approach to Genetic Epidemiology: Concepts and Applications, with an E-learning platform

A Ziegler, IR Konig, F Pahlke - 2011 - books.google.com
A Statistical Approach to Genetic Epidemiology After studying statistics and mathematics at
the University of Munich and obtaining his doctoral degree from the University of Dortmund …

Quality control for genome-wide association studies

ME Weale - Genetic variation: methods and protocols, 2010 - Springer
This chapter is a comprehensive review of quality control (QC) methods for SNP-based
genotyping panels used in genome-wide association studies. These include QC on …

[HTML][HTML] Statistical analysis for genome-wide association study

P Zeng, Y Zhao, C Qian, L Zhang, R Zhang… - Journal of biomedical …, 2015 - ncbi.nlm.nih.gov
In the past few years, genome-wide association study (GWAS) has made great successes in
identifying genetic susceptibility loci underlying many complex diseases and traits. The …

[HTML][HTML] Genome-wide prediction of discrete traits using Bayesian regressions and machine learning

O González-Recio, S Forni - Genetics Selection Evolution, 2011 - Springer
Background Genomic selection has gained much attention and the main goal is to increase
the predictive accuracy and the genetic gain in livestock using dense marker information …

[HTML][HTML] Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities

A Nazarian, AI Yashin, AM Kulminski - Alzheimer's research & therapy, 2019 - Springer
Background Alzheimer's disease (AD) is the most common cause of dementia in the elderly
and the sixth leading cause of death in the United States. AD is mainly considered a …

How to include chromosome X in your genome‐wide association study

IR König, C Loley, J Erdmann… - Genetic epidemiology, 2014 - Wiley Online Library
In current genome‐wide association studies (GWAS), the analysis is usually focused on
autosomal variants only, and the sex chromosomes are often neglected. Recently, a number …

Analysis of the host pharmacogenetic background for prediction of outcome and toxicity in diffuse large B-cell lymphoma treated with R-CHOP21

D Rossi, S Rasi, S Franceschetti, D Capello, A Castelli… - Leukemia, 2009 - nature.com
Abstract Knowledge on the impact of pharmacogenetics in predicting outcome and toxicity in
diffuse large B-cell lymphoma (DLBCL) is scant. We tested 106 consecutive DLBCL treated …