The transformational role of GPU computing and deep learning in drug discovery

M Pandey, M Fernandez, F Gentile, O Isayev… - Nature Machine …, 2022 - nature.com
Deep learning has disrupted nearly every field of research, including those of direct
importance to drug discovery, such as medicinal chemistry and pharmacology. This …

Advancing drug discovery via artificial intelligence

HCS Chan, H Shan, T Dahoun, H Vogel… - Trends in pharmacological …, 2019 - cell.com
Drug discovery and development are among the most important translational science
activities that contribute to human health and wellbeing. However, the development of a new …

Galactica: A large language model for science

R Taylor, M Kardas, G Cucurull, T Scialom… - arXiv preprint arXiv …, 2022 - arxiv.org
Information overload is a major obstacle to scientific progress. The explosive growth in
scientific literature and data has made it ever harder to discover useful insights in a large …

Uni-mol: A universal 3d molecular representation learning framework

G Zhou, Z Gao, Q Ding, H Zheng, H Xu, Z Wei, L Zhang… - 2023 - chemrxiv.org
Molecular representation learning (MRL) has gained tremendous attention due to its critical
role in learning from limited supervised data for applications like drug design. In most MRL …

[HTML][HTML] Geometry-enhanced molecular representation learning for property prediction

X Fang, L Liu, J Lei, D He, S Zhang, J Zhou… - Nature Machine …, 2022 - nature.com
Effective molecular representation learning is of great importance to facilitate molecular
property prediction. Recent advances for molecular representation learning have shown …

Motif-based graph self-supervised learning for molecular property prediction

Z Zhang, Q Liu, H Wang, C Lu… - Advances in Neural …, 2021 - proceedings.neurips.cc
Predicting molecular properties with data-driven methods has drawn much attention in
recent years. Particularly, Graph Neural Networks (GNNs) have demonstrated remarkable …

Equiformer: Equivariant graph attention transformer for 3d atomistic graphs

YL Liao, T Smidt - arXiv preprint arXiv:2206.11990, 2022 - arxiv.org
Despite their widespread success in various domains, Transformer networks have yet to
perform well across datasets in the domain of 3D atomistic graphs such as molecules even …

Pytorch distributed: Experiences on accelerating data parallel training

S Li, Y Zhao, R Varma, O Salpekar, P Noordhuis… - arXiv preprint arXiv …, 2020 - arxiv.org
This paper presents the design, implementation, and evaluation of the PyTorch distributed
data parallel module. PyTorch is a widely-adopted scientific computing package used in …

Knowledge graph-enhanced molecular contrastive learning with functional prompt

Y Fang, Q Zhang, N Zhang, Z Chen, X Zhuang… - Nature Machine …, 2023 - nature.com
Deep learning models can accurately predict molecular properties and help making the
search for potential drug candidates faster and more efficient. Many existing methods are …

Composition-based multi-relational graph convolutional networks

S Vashishth, S Sanyal, V Nitin, P Talukdar - arXiv preprint arXiv …, 2019 - arxiv.org
Graph Convolutional Networks (GCNs) have recently been shown to be quite successful in
modeling graph-structured data. However, the primary focus has been on handling simple …