Current and prospective computational approaches and challenges for developing COVID-19 vaccines

W Hwang, W Lei, NM Katritsis, M MacMahon… - Advanced drug delivery …, 2021 - Elsevier
Abstract SARS-CoV-2, which causes COVID-19, was first identified in humans in late 2019
and is a coronavirus which is zoonotic in origin. As it spread around the world there has …

Towards systems immunology of critical illness at scale: from single cell 'omics to digital twins

Y Vodovotz - Trends in immunology, 2023 - cell.com
Single-cell 'omics methodology has yielded unprecedented insights based largely on data-
centric informatics for reducing, and thus interpreting, massive datasets. In parallel …

Immune biomarkers: the promises and pitfalls of personalized medicine

JCD Willis, GM Lord - Nature Reviews Immunology, 2015 - nature.com
Substantial progress in molecular immunology, coupled with an increasing focus on
translational research and an enthusiasm for personalized medicine, has resulted in a rapid …

[HTML][HTML] Assessing mathematical models of influenza infections using features of the immune response

HM Dobrovolny, MB Reddy, MA Kamal, CR Rayner… - PloS one, 2013 - journals.plos.org
The role of the host immune response in determining the severity and duration of an
influenza infection is still unclear. In order to identify severity factors and more accurately …

[HTML][HTML] Simulation modelling for immunologists

A Handel, NL La Gruta, PG Thomas - Nature Reviews Immunology, 2020 - nature.com
The immune system is inordinately complex with many interacting components determining
overall outcomes. Mathematical and computational modelling provides a useful way in …

[HTML][HTML] Mapping CAR T-cell design space using agent-based models

AN Prybutok, JS Yu, JN Leonard… - Frontiers in Molecular …, 2022 - frontiersin.org
Chimeric antigen receptor (CAR) T-cell therapy shows promise for treating liquid cancers
and increasingly for solid tumors as well. While potential design strategies exist to address …

Solving immunology?

Y Vodovotz, A Xia, EL Read, J Bassaganya-Riera… - Trends in …, 2017 - cell.com
Emergent responses of the immune system result from the integration of molecular and
cellular networks over time and across multiple organs. High-content and high-throughput …

Systems biology and big data in asthma and allergy: recent discoveries and emerging challenges

HHF Tang, PD Sly, PG Holt, KE Holt… - European Respiratory …, 2020 - Eur Respiratory Soc
Asthma is a common condition caused by immune and respiratory dysfunction, and it is often
linked to allergy. A systems perspective may prove helpful in unravelling the complexity of …

Multiscale modelling in immunology: a review

A Cappuccio, P Tieri, F Castiglione - Briefings in bioinformatics, 2016 - academic.oup.com
One of the greatest challenges in biomedicine is to get a unified view of observations made
from the molecular up to the organism scale. Towards this goal, multiscale models have …

[HTML][HTML] Bioinformatics for cancer immunology and immunotherapy

P Charoentong, M Angelova, M Efremova… - Cancer Immunology …, 2012 - Springer
Recent mechanistic insights obtained from preclinical studies and the approval of the first
immunotherapies has motivated increasing number of academic investigators and …