Artificial intelligence in cancer target identification and drug discovery

Y You, X Lai, Y Pan, H Zheng, J Vera, S Liu… - … and Targeted Therapy, 2022 - nature.com
Artificial intelligence is an advanced method to identify novel anticancer targets and discover
novel drugs from biology networks because the networks can effectively preserve and …

Protein‐protein interaction networks as miners of biological discovery

S Wang, R Wu, J Lu, Y Jiang, T Huang, YD Cai - Proteomics, 2022 - Wiley Online Library
Protein‐protein interactions (PPIs) form the basis of a myriad of biological pathways and
mechanism, such as the formation of protein complexes or the components of signaling …

TTD: Therapeutic Target Database describing target druggability information

Y Zhou, Y Zhang, D Zhao, X Yu, X Shen… - Nucleic acids …, 2024 - academic.oup.com
Target discovery is one of the essential steps in modern drug development, and the
identification of promising targets is fundamental for developing first-in-class drug. A variety …

SAveRUNNER: an R-based tool for drug repurposing

G Fiscon, P Paci - BMC bioinformatics, 2021 - Springer
Background Currently, no proven effective drugs for the novel coronavirus disease COVID-
19 exist and despite widespread vaccination campaigns, we are far short from herd …

[HTML][HTML] Molecular interaction networks and drug development: Novel approach to drug target identification and drug repositioning

J Loscalzo - The FASEB Journal, 2023 - ncbi.nlm.nih.gov
Conventional drug discovery requires identifying a protein target believed to be important for
disease mechanism and screening compounds for those that beneficially alter the target's …

[HTML][HTML] Drug repurposing: a network-based approach to amyotrophic lateral sclerosis

G Fiscon, F Conte, S Amadio, C Volonté, P Paci - Neurotherapeutics, 2021 - Elsevier
The continuous adherence to the conventional “one target, one drug” paradigm has failed so
far to provide effective therapeutic solutions for heterogeneous and multifactorial diseases …

Complexity of life sciences in quantum and AI era

A Pyrkov, A Aliper, D Bezrukov… - Wiley …, 2024 - Wiley Online Library
Having made significant advancements in understanding living organisms at various levels
such as genes, cells, molecules, tissues, and pathways, the field of life sciences is now …

BIONIC: biological network integration using convolutions

DT Forster, SC Li, Y Yashiroda, M Yoshimura, Z Li… - Nature …, 2022 - nature.com
Biological networks constructed from varied data can be used to map cellular function, but
each data type has limitations. Network integration promises to address these limitations by …

Circadian regulation of the neuroimmune environment across the lifespan: from brain development to aging

R Chen, BN Routh, AD Gaudet… - Journal of biological …, 2023 - journals.sagepub.com
Circadian clocks confer 24-h periodicity to biological systems, to ultimately maximize energy
efficiency and promote survival in a world with regular environmental light cycles. In …

R-mixup: Riemannian mixup for biological networks

X Kan, Z Li, H Cui, Y Yu, R Xu, S Yu, Z Zhang… - Proceedings of the 29th …, 2023 - dl.acm.org
Biological networks are commonly used in biomedical and healthcare domains to effectively
model the structure of complex biological systems with interactions linking biological entities …