Transcriptomics has significantly grown as a functional genomics tool for understanding the
expression of biological systems. The generated transcriptomics data can be utilised to …

Microbial communities thrive through interactions and communication, which are
challenging to study as most microorganisms are not cultivable. To address this challenge …

Stem cells exist in vitro in a spectrum of interconvertible pluripotent states. Analyzing
hundreds of hiPSCs derived from different individuals, we show the proportions of these …

Background Brassica napus is an important oilseed crop providing high-quality vegetable
oils for human consumption and non-food applications. However, the regulation between …

Motivation Transcriptome-based gene co-expression analysis has become a standard
procedure for structured and contextualized understanding and comparison of different …

Lactiplantibacillus plantarum is a probiotic bacterium widely used in food and health
industries, but its gene regulatory information is limited in existing databases, which …

Network biology finds application in interpreting molecular interaction networks and
providing insightful inferences using graph theoretical analysis of biological systems. The …

Wheat is one of the most important global crops and selection for better performance has
been ongoing since ancient times. As a quantitative trait controlled by the interplay of …

Imaging-based spatial transcriptomics technologies such as MERFISH offer snapshots of
cellular processes in unprecedented detail, but new analytic tools are needed to realize their …

Gene co-expression network analysis has been widely used in gene function annotation,
especially for long noncoding RNAs (lncRNAs). However, there is a lack of effective cross …