Role of protein glycosylation in host-pathogen interaction

B Lin, X Qing, J Liao, K Zhuo - Cells, 2020 - mdpi.com
Host-pathogen interactions are fundamental to our understanding of infectious diseases.
Protein glycosylation is one kind of common post-translational modification, forming …

How viruses hijack cell regulation

NE Davey, G Travé, TJ Gibson - Trends in biochemical sciences, 2011 - cell.com
Viruses, as obligate intracellular parasites, are the pathogens that have the most intimate
relationship with their host, and as such, their genomes have been shaped directly by …

Viruses are a dominant driver of protein adaptation in mammals

D Enard, L Cai, C Gwennap, DA Petrov - elife, 2016 - elifesciences.org
Viruses interact with hundreds to thousands of proteins in mammals, yet adaptation against
viruses has only been studied in a few proteins specialized in antiviral defense. Whether …

The lipid mediator protectin D1 inhibits influenza virus replication and improves severe influenza

M Morita, K Kuba, A Ichikawa, M Nakayama, J Katahira… - Cell, 2013 - cell.com
Influenza A viruses are a major cause of mortality. Given the potential for future lethal
pandemics, effective drugs are needed for the treatment of severe influenza such as that …

[HTML][HTML] Prediction of human-virus protein-protein interactions through a sequence embedding-based machine learning method

X Yang, S Yang, Q Li, S Wuchty, Z Zhang - Computational and structural …, 2020 - Elsevier
The identification of human-virus protein-protein interactions (PPIs) is an essential and
challenging research topic, potentially providing a mechanistic understanding of viral …

Gene expression variability across cells and species shapes innate immunity

T Hagai, X Chen, RJ Miragaia, R Rostom, T Gomes… - Nature, 2018 - nature.com
As the first line of defence against pathogens, cells mount an innate immune response,
which varies widely from cell to cell. The response must be potent but carefully controlled to …

Victors: a web-based knowledge base of virulence factors in human and animal pathogens

S Sayers, L Li, E Ong, S Deng, G Fu, Y Lin… - Nucleic acids …, 2019 - academic.oup.com
Virulence factors (VFs) are molecules that allow microbial pathogens to overcome host
defense mechanisms and cause disease in a host. It is critical to study VFs for better …

Hypergraph models of biological networks to identify genes critical to pathogenic viral response

S Feng, E Heath, B Jefferson, C Joslyn, H Kvinge… - BMC …, 2021 - Springer
Background Representing biological networks as graphs is a powerful approach to reveal
underlying patterns, signatures, and critical components from high-throughput biomolecular …

Temporal proteome and lipidome profiles reveal hepatitis C virus-associated reprogramming of hepatocellular metabolism and bioenergetics

DL Diamond, AJ Syder, JM Jacobs… - PLoS …, 2010 - journals.plos.org
Proteomic and lipidomic profiling was performed over a time course of acute hepatitis C
virus (HCV) infection in cultured Huh-7.5 cells to gain new insights into the intracellular …

[图书][B] Algorithms and theory of computation handbook, volume 2: special topics and techniques

MJ Atallah, M Blanton - 2009 - books.google.com
This handbook provides an up-to-date compendium of fundamental computer science
topics, techniques, and applications. Along with updating and revising many of the existing …