State-of-the-art biocatalysis

JB Pyser, S Chakrabarty, EO Romero… - ACS central …, 2021 - ACS Publications
The use of enzyme-mediated reactions has transcended ancient food production to the
laboratory synthesis of complex molecules. This evolution has been accelerated by …

The EMBL-EBI bioinformatics web and programmatic tools framework

W Li, A Cowley, M Uludag, T Gur… - Nucleic acids …, 2015 - academic.oup.com
Abstract Since 2009 the EMBL-EBI Job Dispatcher framework has provided free access to a
range of mainstream sequence analysis applications. These include sequence similarity …

[HTML][HTML] Innovation, conservation, and repurposing of gene function in root cell type development

K Kajala, M Gouran, L Shaar-Moshe, GA Mason… - Cell, 2021 - cell.com
Plant species have evolved myriads of solutions, including complex cell type development
and regulation, to adapt to dynamic environments. To understand this cellular diversity, we …

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

P Hingamp, N Grimsley, SG Acinas, C Clerissi… - The ISME …, 2013 - academic.oup.com
Nucleo-cytoplasmic large DNA viruses (NCLDVs) constitute a group of eukaryotic viruses
that can have crucial ecological roles in the sea by accelerating the turnover of their …

[HTML][HTML] The effect of primer choice and short read sequences on the outcome of 16S rRNA gene based diversity studies

J Ghyselinck, S Pfeiffer, K Heylen, A Sessitsch… - PloS one, 2013 - journals.plos.org
Different regions of the bacterial 16S rRNA gene evolve at different evolutionary rates. The
scientific outcome of short read sequencing studies therefore alters with the gene region …

[HTML][HTML] A suberized exodermis is required for tomato drought tolerance

A Cantó-Pastor, K Kajala, L Shaar-Moshe, C Manzano… - Nature Plants, 2024 - nature.com
Plant roots integrate environmental signals with development using exquisite spatiotemporal
control. This is apparent in the deposition of suberin, an apoplastic diffusion barrier, which …

[HTML][HTML] Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics

GA Bravo, A Antonelli, CD Bacon, K Bartoszek… - PeerJ, 2019 - peerj.com
ABSTRACT Building the Tree of Life (ToL) is a major challenge of modern biology, requiring
advances in cyberinfrastructure, data collection, theory, and more. Here, we argue that …

Organizing the global diversity of microviruses

PC Kirchberger, ZA Martinez, H Ochman - Mbio, 2022 - Am Soc Microbiol
Microviruses encompass an astonishing array of small, single-stranded DNA phages that,
due to the surge in metagenomic surveys, are now known to be prevalent in most …

Emergence of a New Highly Successful Acapsular Group A Streptococcus Clade of Genotype emm89 in the United Kingdom

CE Turner, J Abbott, T Lamagni, MTG Holden, S David… - MBio, 2015 - Am Soc Microbiol
ABSTRACT Group A Streptococcus (GAS) genotype emm 89 is increasingly recognized as a
leading cause of disease worldwide, yet factors that underlie the success of this emm type …

[HTML][HTML] Gene regulatory networks shape developmental plasticity of root cell types under water extremes in rice

MA Reynoso, AT Borowsky, GC Pauluzzi, E Yeung… - Developmental Cell, 2022 - cell.com
Understanding how roots modulate development under varied irrigation or rainfall is crucial
for development of climate-resilient crops. We established a toolbox of tagged rice lines to …