A roadmap for multi-omics data integration using deep learning

M Kang, E Ko, TB Mersha - Briefings in Bioinformatics, 2022 - academic.oup.com
High-throughput next-generation sequencing now makes it possible to generate a vast
amount of multi-omics data for various applications. These data have revolutionized …

Interpretable machine learning methods for predictions in systems biology from omics data

D Sidak, J Schwarzerová, W Weckwerth… - Frontiers in molecular …, 2022 - frontiersin.org
Machine learning has become a powerful tool for systems biologists, from diagnosing
cancer to optimizing kinetic models and predicting the state, growth dynamics, or type of a …

Deep learning-based weather prediction: a survey

X Ren, X Li, K Ren, J Song, Z Xu, K Deng, X Wang - Big Data Research, 2021 - Elsevier
Weather forecasting plays a fundamental role in the early warning of weather impacts on
various aspects of human livelihood. For instance, weather forecasting provides decision …

Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification

P Moris, J De Pauw, A Postovskaya… - Briefings in …, 2021 - academic.oup.com
The prediction of epitope recognition by T-cell receptors (TCRs) has seen many
advancements in recent years, with several methods now available that can predict …

Deep‐learning artificial intelligence analysis of clinical variables predicts mortality in COVID‐19 patients

JS Zhu, P Ge, C Jiang, Y Zhang, X Li… - Journal of the …, 2020 - Wiley Online Library
Objective The large number of clinical variables associated with coronavirus disease 2019
(COVID‐19) infection makes it challenging for frontline physicians to effectively triage COVID …

Deep learning prediction of likelihood of ICU admission and mortality in COVID-19 patients using clinical variables

X Li, P Ge, J Zhu, H Li, J Graham, A Singer… - PeerJ, 2020 - peerj.com
Background This study aimed to develop a deep-learning model and a risk-score system
using clinical variables to predict intensive care unit (ICU) admission and in-hospital …

Deep neural networks with L1 and L2 regularization for high dimensional corporate credit risk prediction

M Yang, MK Lim, Y Qu, X Li, D Ni - Expert Systems with Applications, 2023 - Elsevier
Accurate credit risk prediction can help companies avoid bankruptcies and make
adjustments ahead of time. There is a tendency in corporate credit risk prediction that more …

HLAB: learning the BiLSTM features from the ProtBert-encoded proteins for the class I HLA-peptide binding prediction

Y Zhang, G Zhu, K Li, F Li, L Huang… - Briefings in …, 2022 - academic.oup.com
Abstract Human Leukocyte Antigen (HLA) is a type of molecule residing on the surfaces of
most human cells and exerts an essential role in the immune system responding to the …

Classifying breast cancer subtypes using deep neural networks based on multi-omics data

Y Lin, W Zhang, H Cao, G Li, W Du - Genes, 2020 - mdpi.com
With the high prevalence of breast cancer, it is urgent to find out the intrinsic difference
between various subtypes, so as to infer the underlying mechanisms. Given the available …

SwarmDeepSurv: swarm intelligence advances deep survival network for prognostic radiomics signatures in four solid cancers

Q Al-Tashi, MB Saad, A Sheshadri, CC Wu, JY Chang… - Patterns, 2023 - cell.com
Survival models exist to study relationships between biomarkers and treatment effects. Deep
learning-powered survival models supersede the classical Cox proportional hazards …