Metaproteomics to understand how microbiota function: The crystal ball predicts a promising future

J Armengaud - Environmental Microbiology, 2023 - Wiley Online Library
In the medical, environmental, and biotechnological fields, microbial communities have
attracted much attention due to their roles and numerous possible applications. The study of …

Ecosystem-specific microbiota and microbiome databases in the era of big data

V Lobanov, A Gobet, A Joyce - Environmental Microbiome, 2022 - Springer
The rapid development of sequencing methods over the past decades has accelerated both
the potential scope and depth of microbiota and microbiome studies. Recent developments …

Metagenomics vs metaproteomics: A review of their application on anaerobic digestion in biogas generation

TK Lam - Bioresource Technology Reports, 2023 - Elsevier
Understanding the workings of anaerobic digestion in the production of biogas from carbon
waste has been an issue for many scientists. Recently, advancement in techniques finally …

Microbial community functioning during plant litter decomposition

SA Schroeter, D Eveillard, S Chaffron, J Zoppi… - Scientific reports, 2022 - nature.com
Microbial life in soil is fueled by dissolved organic matter (DOM) that leaches from the litter
layer. It is well known that decomposer communities adapt to the available litter source, but it …

Automated prediction and annotation of small open reading frames in microbial genomes

MG Durrant, AS Bhatt - Cell host & microbe, 2021 - cell.com
Small open reading frames (smORFs) and their encoded microproteins play central roles in
microbes. However, there is a vast unexplored space of smORFs within human-associated …

[HTML][HTML] The glyphosate formulation Roundup® LB plus influences the global metabolome of pig gut microbiota in vitro

JL Krause, SB Haange, SS Schäpe… - Science of the Total …, 2020 - Elsevier
Glyphosate is the world's most widely used herbicide, and its potential side effects on the
intestinal microbiota of various animals, from honeybees to livestock and humans, are …

The landscape and perspectives of the human gut metaproteomics

Z Sun, Z Ning, D Figeys - Molecular & Cellular Proteomics, 2024 - ASBMB
The human gut microbiome is closely associated with human health and diseases.
Metaproteomics has emerged as a valuable tool for studying the functionality of the gut …

[HTML][HTML] Metaproteomics, metagenomics and 16S rRNA sequencing provide different perspectives on the aerobic granular sludge microbiome

HBC Kleikamp, D Grouzdev, P Schaasberg… - Water research, 2023 - Elsevier
The tremendous progress in sequencing technologies has made DNA sequencing routine
for microbiome studies. Additionally, advances in mass spectrometric techniques have …

Comparative metaproteomics demonstrates different views on the complex granular sludge microbiome

HBC Kleikamp, D Grouzdev, P Schaasberg… - BioRxiv, 2022 - biorxiv.org
The tremendous progress in sequencing technologies has made 16S amplicon and whole
metagenome sequencing routine in microbiome studies. Furthermore, advances in mass …

Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome

H Petruschke, C Schori, S Canzler, S Riesbeck… - Microbiome, 2021 - Springer
Background The intestinal microbiota plays a crucial role in protecting the host from
pathogenic microbes, modulating immunity and regulating metabolic processes. We studied …